Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

feature/concise info #1012

Merged
merged 6 commits into from
Apr 29, 2024
Merged
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
47 changes: 43 additions & 4 deletions autofit/mapper/prior_model/representative.py
Original file line number Diff line number Diff line change
@@ -1,4 +1,5 @@
from collections import defaultdict
from typing import List


def find_groups(path_value_tuples, limit=1):
Expand Down Expand Up @@ -28,6 +29,44 @@ def find_groups(path_value_tuples, limit=1):
return path_value_tuples


def integers_representative_key(integers: List[int]) -> str:
"""
Given a list of integers, return a string that represents them in a concise way.

e.g.
[1, 2, 3, 4, 5, 6, 7, 8, 9, 10] -> "1 - 10"
[1, 2, 3, 5, 6, 7, 8, 9, 10] -> "1 - 3, 5 - 10"
[1, 2, 3, 5, 6, 7, 8, 9, 10, 12] -> "1 - 3, 5 - 10, 12"

Parameters
----------
integers
The list of integers to represent

Returns
-------
A string representing the integers in a concise way
"""
integers = sorted(integers)
ranges = []
start = integers[0]
end = integers[0]

for integer in integers[1:]:
if integer == end + 1:
end = integer
else:
ranges.append((start, end))
start = integer
end = integer

ranges.append((start, end))

return ", ".join(
f"{start} - {end}" if start != end else str(start) for start, end in ranges
)


def _find_groups(path_value_tuples, position):
groups = defaultdict(list)
paths = []
Expand All @@ -43,11 +82,11 @@ def _find_groups(path_value_tuples, position):
for (before, after, value), names in groups.items():
try:
names = list(map(int, names))
representative_key = integers_representative_key(names)
except ValueError:
pass
representative_key = (
f"{min(names)} - {max(names)}" if len(set(names)) > 1 else names[0]
)

representative_key = (
f"{min(names)} - {max(names)}" if len(set(names)) > 1 else names[0]
)
paths.append(((*before, representative_key, *after), value))
return paths
10 changes: 6 additions & 4 deletions autofit/text/samples_text.py
Original file line number Diff line number Diff line change
Expand Up @@ -36,16 +36,18 @@ def summary(

sigma_formatter = frm.TextFormatter(indent=indent, line_length=line_length)

paths = []
prior_result_map = {}

for i, prior_path in enumerate(samples.model.unique_prior_paths):
value_result = frm.value_result_string_from(
for i, (_, prior) in enumerate(samples.model.unique_path_prior_tuples):
prior_result_map[prior] = frm.value_result_string_from(
parameter_name=parameter_names[i],
value=values[i],
values_at_sigma=values_at_sigma[i],
)

paths.append((prior_path, value_result))
paths = []
for path, prior in samples.model.path_priors_tuples:
paths.append((path, prior_result_map[prior]))

for path, value in find_groups(paths):
sigma_formatter.add(path, value)
Expand Down
8 changes: 5 additions & 3 deletions autofit/text/text_util.py
Original file line number Diff line number Diff line change
Expand Up @@ -58,11 +58,13 @@ def result_info_from(samples) -> str:

paths = []

for prior_path, value in zip(
samples.model.unique_prior_paths,
model = samples.model
for (_, prior), value in zip(
model.unique_path_prior_tuples,
max_log_likelihood_sample,
):
paths.append((prior_path, value))
for path in model.all_paths_for_prior(prior):
paths.append((path, value))

for path, value in find_groups(paths):
formatter.add(path, format_str().format(value))
Expand Down
4 changes: 2 additions & 2 deletions test_autofit/mapper/info/test_representation.py
Original file line number Diff line number Diff line change
Expand Up @@ -36,10 +36,10 @@ def test_exception():
((2, 1), 4),
]
groups = find_groups(info_paths)
assert groups == [(("0 - 2", 0), 1), ((0, 1), 2), ((1, 1), 3), ((2, 1), 4)]
assert groups == [(("0 - 2", 0), 1), (("0", 1), 2), (("1", 1), 3), (("2", 1), 4)]


def test_prefix():
info_paths = [((0, i, 1), 2) for i in range(3)]
groups = find_groups(info_paths)
assert groups == [((0, "0 - 2", 1), 2)]
assert groups == [(("0", "0 - 2", 1), 2)]
23 changes: 21 additions & 2 deletions test_autofit/text/test_concise.py
Original file line number Diff line number Diff line change
Expand Up @@ -3,6 +3,7 @@
import autofit as af
import pytest

from autofit.mapper.prior_model.representative import integers_representative_key
from autofit.text.text_util import result_info_from


Expand Down Expand Up @@ -73,7 +74,7 @@ def test_model_results(samples):

Maximum Log Likelihood Model:

19
0 - 19
centre 1.000
normalization 2.000
sigma 3.000
Expand All @@ -85,7 +86,7 @@ def test_model_results(samples):

Summary (1.0 sigma limits):

19
0 - 19
centre 1.00 (1.00, 1.00)
normalization 2.00 (2.00, 2.00)
sigma 3.00 (3.00, 3.00)
Expand All @@ -94,3 +95,21 @@ def test_model_results(samples):

"""
)


def test_non_consecutive(collection):
collection[10].centre = af.UniformPrior(0.0, 1.0)
print(collection.info)


@pytest.mark.parametrize(
"integers, expected",
[
(list(range(1, 11)), "1 - 10"),
([1], "1"),
([1, 10], "1, 10"),
([1, 2, 3, 8, 9, 10], "1 - 3, 8 - 10"),
],
)
def test_integers_representative_key(integers, expected):
assert integers_representative_key(integers) == expected
Loading