Merge branch 'rformassspectrometry:main' into patch-1

rformassspectrometry · Jan 21, 2025 · 3a4e284 · 3a4e284
2 parents 4cc49fe + 1e06313
commit 3a4e284
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diff --git a/.github/workflows/check-bioc.yml b/.github/workflows/check-bioc.yml
@@ -161,7 +161,7 @@ jobs:
 
           ## Manually install required packages
           BiocManager::install("msdata")
-          ## xcms here ?
+          BiocManager::install("sneumann/xcms", ref = "devel")
 
           # BiocManager::install(c("devtools", "usethis", "vdiffr"), dependencies = TRUE, ask = FALSE, update = FALSE)
           ## For running the checks

diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: RuSirius
 Title: R Implementation of the Sirius software
-Version: 0.1.1
+Version: 0.1.2
 Description: The RuSirius package allows the user to interact with the Sirius
              software from R. Sirius is a software for the analysis and
              annotation of mass spectrometry data. RuSirius makes use of the

diff --git a/NEWS.md b/NEWS.md
@@ -1,4 +1,9 @@
-# Version 0.1.0
+# Version 0.1
+
+## Changes in 0.1.2
+
+- Fix installation of Spectra dev version 
+- Addition of code to install devel version of xcms in readme.md
 
 ## Changes in 0.1.1
 

diff --git a/README.md b/README.md
@@ -39,6 +39,13 @@ library(remotes)
 BiocManager::install("RforMassSpectrometry/RuSirius")
 ```
 
+Laslty, please install the devel version of xcms (this is temporary and will not 
+be needed after the next bioconductor release.)
+
+```r
+BiocManager::install("sneumann/xcms", ref = "devel")
+```
+
 --------------------------------------------------------------------------------
 
 ## Usage