Read me for group 20 github repo

Project contributors

Here the student number and github username for all project contributors are stated.

Anton: (s183220), AntonWangDTU
Line: (s184242), line-dh
Jeppe: (s213426), JeppeMikkelsenDenmark
Oscar: (s193775), OscarBaadWard
Johan: (s225001), johanstaffeldt

Data availability

/R/01_load.qmd downloads raw data via API call to uniprot and saves data in the directory data/_raw.
If you wish to download data for other purposes, then use the URLs from there.

Dependencies

Following packages are required

• tidyverse

• knitr

• patchwork

• ggseqlogo

Instruction to run the project

Running these lines of code from console in R will run the entire project

Working directory should be the root project directory (where the .Rproj file is located)

Rendering /R/00_all.qmd will render all /R/*.qmd files individually as well

# Creating data folder with subdir _raw
dir.create("data")
dir.create("data/_raw")

# loading library
library(quarto)

# Render 00_all.qmd document will run the entire project and move output to /results
quarto_render("R/00_all.qmd")
file.rename(from = "R/00_all.html",
            to = "results/00_all.html")