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seqrs V4.1 support and singularity envWhitelist #208

Merged

replikation merged 3 commits into replikation:customBED from MarieLataretu:master

Feb 2, 2022

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MarieLataretu commented Jan 28, 2022

added a seqrs call for ARTIC primer V4.1
added envWhitelist in the singularity profile (nextflow.config)
- allows to use e.g. wget on HPCs
- has no effects on local execution
- added a note in the help and readme

I haven't manually run the CI tests yet.

MarieLataretu added 3 commits

January 3, 2022 14:19


          added V4.1 to seqrs

a1d5b15


          Merge branch 'master' of https://github.com/MarieLataretu/poreCov

34a8abe


          added envWhitelist for singularity

87b54af

replikation self-requested a review

February 2, 2022 09:50

replikation approved these changes

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replikation changed the base branch from master to customBED

February 2, 2022 12:05

Owner

replikation commented Feb 2, 2022

merging into replikation:customBED branch to include for testing

replikation merged commit 4592054 into replikation:customBED

replikation mentioned this pull request

Custom bed #211

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