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Merge pull request #242 from replikation/MarieLataretu/issue238
[Feature] add ARTIC V5 and V5.1
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| https://github.com/quick-lab/nCOV19/blob/30c18f6e5dcae613560044a11374387f6da886a8/v5.1/nCOV19_400.primer.bed |
207 changes: 207 additions & 0 deletions
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data/external_primer_schemes/nCoV-2019/V5.1/nCoV-2019.primer.bed
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| Original file line number | Diff line number | Diff line change |
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| MN908947.3 23 48 SARS-CoV-2_1_LEFT 1 + GTAACAAACCAACCAACTTTCGATC | ||
| MN908947.3 398 423 SARS-CoV-2_1_RIGHT 1 - AAGCCACAAGTGCCATCTTTAAGAT | ||
| MN908947.3 344 366 SARS-CoV-2_2_LEFT 2 + TCGTACGTGGCTTTGGAGACTC | ||
| MN908947.3 707 732 SARS-CoV-2_2_RIGHT 2 - TCTTCATAAGGATCAGTGCCAAGCT | ||
| MN908947.3 664 687 SARS-CoV-2_3_LEFT 1 + CATAGTTACGGCGCCGATCTAAA | ||
| MN908947.3 1018 1047 SARS-CoV-2_3_RIGHT 1 - TTTGCCAATTTAATTTCAAAAGGTGTCTG | ||
| MN908947.3 970 995 SARS-CoV-2_4_LEFT 2 + CATGAAATTGCTTGGTACACGGAAC | ||
| MN908947.3 1340 1370 SARS-CoV-2_4_RIGHT 2 - AAATTTTAACAACAGCATTTTGGGGTAAGT | ||
| MN908947.3 1292 1320 SARS-CoV-2_5_LEFT 1 + TTTGTGGCACTGAGAATTTGACTAAAGA | ||
| MN908947.3 1660 1692 SARS-CoV-2_5_RIGHT 1 - ATAATGGCGATCTCTTCATTAAGTTTAAAGTC | ||
| MN908947.3 1609 1640 SARS-CoV-2_6_LEFT 2 + AACCTTCTTGAAATACTCCAAAAAGAGAAAG | ||
| MN908947.3 1965 1998 SARS-CoV-2_6_RIGHT 2 - AGTGAATACTGTGAAATTCCATCTAGTATTGTT | ||
| MN908947.3 1921 1945 SARS-CoV-2_7_LEFT 1 + GAAACTGCTCAAAATTCTGTGCGT | ||
| MN908947.3 2283 2316 SARS-CoV-2_7_RIGHT 1 - TTATTTACAAGCTTAAAGAATGTCTGAACACTC | ||
| MN908947.3 2229 2252 SARS-CoV-2_8_LEFT 2 + TGCTTGTGAAATTGTCGGTGGAC | ||
| MN908947.3 2603 2629 SARS-CoV-2_8_RIGHT 2 - AAGCCCGTTAATACAAACTGGTGTAC | ||
| MN908947.3 2533 2563 SARS-CoV-2_9_LEFT 1 + GTCTTGAAAACTGGTGATTTACAACCATTA | ||
| MN908947.3 2900 2933 SARS-CoV-2_9_RIGHT 1 - GTAATTCAGATACTGGTTGCAAAGTTTTTATGA | ||
| MN908947.3 2854 2880 SARS-CoV-2_10_LEFT 2 + CTCGGTACAGAAGTAAATGAGTTCGC | ||
| MN908947.3 3233 3254 SARS-CoV-2_10_RIGHT 2 - TGTCCTCACTGCCGTCTTGTT | ||
| MN908947.3 3184 3213 SARS-CoV-2_11_LEFT 1 + GAGCAAGAAGAAGATTGGTTAGATGATGA | ||
| MN908947.3 3560 3584 SARS-CoV-2_11_RIGHT 1 - CGCTTAAAACACAACTACCACCCA | ||
| MN908947.3 3510 3540 SARS-CoV-2_12_LEFT 2 + CATGCAAGTTGAATCTGATGATTACATAGC | ||
| MN908947.3 3883 3913 SARS-CoV-2_12_RIGHT 2 - AGTTATAAATGGCTTAACTTCCTCTTTAGG | ||
| MN908947.3 3791 3824 SARS-CoV-2_13_LEFT 1 + CTGTCTTTGATAAAAATCTCTATGACAAACTTG | ||
| MN908947.3 4147 4180 SARS-CoV-2_13_RIGHT 1 - CTTTTTAGTAGGTATAACCACAGCAGTTAAAAC | ||
| MN908947.3 4079 4108 SARS-CoV-2_14_LEFT 2 + GTGACATTGACATCACTTTCTTAAAGAAA | ||
| MN908947.3 4457 4488 SARS-CoV-2_14_RIGHT 2 - CCCTTATATTTACGCTGTATAGTTGAAACTA | ||
| MN908947.3 4403 4425 SARS-CoV-2_15_LEFT 1 + CACATGCAGAAGAAACACGCAA | ||
| MN908947.3 4776 4803 SARS-CoV-2_15_RIGHT 1 - TCTTTATAGGAACCAGCAAGTGAGATG | ||
| MN908947.3 4723 4756 SARS-CoV-2_16_LEFT 2 + AATGGTTATCTTACTTCTTCTTCTAAAACACCT | ||
| MN908947.3 5089 5119 SARS-CoV-2_16_RIGHT 2 - AAATGTTTTACCTTCATGTGAATTATGAGG | ||
| MN908947.3 5036 5063 SARS-CoV-2_17_LEFT 1 + GACAACAGTTTGGTCCAACTTATTTGG | ||
| MN908947.3 5398 5429 SARS-CoV-2_17_RIGHT 1 - CTGTCTTATTACAGTAGGCTAAGATAAGTGC | ||
| MN908947.3 5344 5370 SARS-CoV-2_18_LEFT 2 + GCTCTACAAGATGCTTATTACAGAGC | ||
| MN908947.3 5716 5744 SARS-CoV-2_18_RIGHT 2 - ACTCACTAGCACAAGTAAATGTACCATG | ||
| MN908947.3 5671 5696 SARS-CoV-2_19_LEFT 1 + CCTTTTGTTATGATGTCAGCACCAC | ||
| MN908947.3 6031 6062 SARS-CoV-2_19_RIGHT 1 - CACATACAAACTTAAAATTATCGAAGCTTGC | ||
| MN908947.3 5891 5923 SARS-CoV-2_20_LEFT 2 + CCATAAAACCAGTTACTTATAAATTGGATGGT | ||
| MN908947.3 6257 6288 SARS-CoV-2_20_RIGHT 2 - CAGGTATTTGGTTTATACGTGGCTTTATTAG | ||
| MN908947.3 6204 6237 SARS-CoV-2_21_LEFT 1 + GAAAGGAGCTAAATTGTTACATAAACCTATTGT | ||
| MN908947.3 6562 6595 SARS-CoV-2_21_RIGHT 1 - AGGTTTCTTAATAGTAAGACTAGAATTGTCTAC | ||
| MN908947.3 6515 6542 SARS-CoV-2_22_LEFT 2 + TAAAAATTACAGAAGAGGTTGGCCACA | ||
| MN908947.3 6882 6915 SARS-CoV-2_22_RIGHT 2 - TAATTAAATGAAGCCTCTAGACAAAATTTACCG | ||
| MN908947.3 6823 6854 SARS-CoV-2_23_LEFT 1 + AATTCTAGAATTAAAGCATCTATGCCGACTA | ||
| MN908947.3 7199 7229 SARS-CoV-2_23_RIGHT 1 - CAAAAGCAGTTAAATCCCATTTAAAAGATG | ||
| MN908947.3 7145 7179 SARS-CoV-2_24_LEFT 2 + GTTTAGATTCTTTAGACACCTATCCTTCTTTAGA | ||
| MN908947.3 7518 7545 SARS-CoV-2_24_RIGHT 2 - ACAATAGTTGTACATTCGACTCTTGTT | ||
| MN908947.3 7456 7482 SARS-CoV-2_25_LEFT 1 + GTGCATGTTGTAGACGGTTGTAATTC | ||
| MN908947.3 7819 7850 SARS-CoV-2_25_RIGHT 1 - CTCTCAGGTTGTCTAAGTTAACAAAATGAGA | ||
| MN908947.3 7768 7797 SARS-CoV-2_26_LEFT 2 + CATCTTTACTTTGATAAAGCTGGTCAAAA | ||
| MN908947.3 8136 8169 SARS-CoV-2_26_RIGHT 2 - GAAATAAAAGTAGATAAGACATTGTCTAAGGAC | ||
| MN908947.3 8085 8112 SARS-CoV-2_27_LEFT 1 + AAAACTCAAAACACTAGTTGCAACTGC | ||
| MN908947.3 8468 8498 SARS-CoV-2_27_RIGHT 1 - CACATGTCAACTTAAAAGGTAAGTTATTCT | ||
| MN908947.3 8406 8436 SARS-CoV-2_28_LEFT 2 + CGTTAAAGATTTCATGTCATTGTCTGAACA | ||
| MN908947.3 8781 8806 SARS-CoV-2_28_RIGHT 2 - ATTAGTATAACTACCACCACGCTGG | ||
| MN908947.3 8732 8761 SARS-CoV-2_29_LEFT 1 + CAGATACTTGTTTTGCTAACAAACATGCT | ||
| MN908947.3 9107 9129 SARS-CoV-2_29_RIGHT 1 - ACATAACGTGTGTCAGGGCGTA | ||
| MN908947.3 9023 9052 SARS-CoV-2_30_LEFT 2 + CAATTTTTAAAGATGCTTCTGGTAAGCCA | ||
| MN908947.3 9397 9423 SARS-CoV-2_30_RIGHT 2 - ACAATACCACCAGCTACTATAGATGC | ||
| MN908947.3 9322 9355 SARS-CoV-2_31_LEFT 1 + GGTGTAGATGCTGTAAATTTACTTACTAATATG | ||
| MN908947.3 9673 9706 SARS-CoV-2_31_RIGHT 1 - ACAAATGATATAAGCAATTGTTATCCAGAAAGG | ||
| MN908947.3 9571 9604 SARS-CoV-2_32_LEFT 2 + GGTGTTTATTCTGTTATTTACTTGTACTTGACA | ||
| MN908947.3 9949 9971 SARS-CoV-2_32_RIGHT 2 - TTGCGAGATGACAACAAGCAGC | ||
| MN908947.3 9896 9929 SARS-CoV-2_33_LEFT 1 + ATAATAAGTACAAGTATTTTAGTGGAGCAATGG | ||
| MN908947.3 10266 10295 SARS-CoV-2_33_RIGHT 1 - AATGTCCAATAACCCTGAGTTGAACATTA | ||
| MN908947.3 10215 10245 SARS-CoV-2_34_LEFT 2 + TGAAGATTTACTCATTCGTAAGTCTAATCA | ||
| MN908947.3 10587 10615 SARS-CoV-2_34_RIGHT 2 - GTCAACAAAAGGTCCATAAAAGTTACCT | ||
| MN908947.3 10527 10557 SARS-CoV-2_35_LEFT 1 + TTTTTGTTACATGCACCATATGGAATTACC | ||
| MN908947.3 10897 10927 SARS-CoV-2_35_RIGHT 1 - AAATTCATCTTCTAATAAAGCACTACCCAA | ||
| MN908947.3 10832 10865 SARS-CoV-2_36_LEFT 2 + CCGTTTTAGATATGTGTGCTTCATTAAAAGAAT | ||
| MN908947.3 11201 11232 SARS-CoV-2_36_RIGHT 2 - GGCATATAGACCATATTAAAATAAGCTACAG | ||
| MN908947.3 11152 11181 SARS-CoV-2_37_LEFT 1 + AAACATAAGCATGCATTTCTCTGTTTGTT | ||
| MN908947.3 11514 11536 SARS-CoV-2_37_RIGHT 1 - ACCTCTGGCCAAAAACATGACA | ||
| MN908947.3 11463 11494 SARS-CoV-2_38_LEFT 2 + GTGGGCTCTTATAATCTCTGTTACTTCTAAC | ||
| MN908947.3 11832 11863 SARS-CoV-2_38_RIGHT 2 - CTTTACATCTGACATTTTAGACTGTACAGTG | ||
| MN908947.3 11785 11811 SARS-CoV-2_39_LEFT 1 + AACATTAAATTGTTGGGTGTTGGTGG | ||
| MN908947.3 12161 12185 SARS-CoV-2_39_RIGHT 1 - CAGAATCACCATTAGCAACAGCCT | ||
| MN908947.3 12112 12137 SARS-CoV-2_40_LEFT 2 + TCCCTTCCATCATATGCAGCTTTTG | ||
| MN908947.3 12477 12510 SARS-CoV-2_40_RIGHT 2 - TTTTTATATGTGTTATAGTCTGGTATGACAACC | ||
| MN908947.3 12419 12444 SARS-CoV-2_41_LEFT 1 + CAAGAGATGGTTGTGTTCCCTTGAA | ||
| MN908947.3 12794 12819 SARS-CoV-2_41_RIGHT 1 - AACAGTGCAAGTACAAACCTACCTC | ||
| MN908947.3 12752 12774 SARS-CoV-2_42_LEFT 2 + GCACTGATGACAATGCGTTAGC | ||
| MN908947.3 13121 13146 SARS-CoV-2_42_RIGHT 2 - CAATTAGTGATTGGTTGTCCCCCAC | ||
| MN908947.3 13075 13099 SARS-CoV-2_43_LEFT 1 + GCTTTTGCTGTAGATGCTGCTAAA | ||
| MN908947.3 13458 13480 SARS-CoV-2_43_RIGHT 1 - CACCGCAAACCCGTTTAAAAAC | ||
| MN908947.3 13415 13435 SARS-CoV-2_44_LEFT 2 + ATCAACTCCGCGAACCCATG | ||
| MN908947.3 13787 13815 SARS-CoV-2_44_RIGHT 2 - TGCCATTGTGTATTTAGTAAGACGTTGA | ||
| MN908947.3 13738 13767 SARS-CoV-2_45_LEFT 1 + ACTTCTTTAAGTTTAGAATAGACGGTGAC | ||
| MN908947.3 14120 14144 SARS-CoV-2_45_RIGHT 1 - TCTACAACAGGAACTCCACTACCT | ||
| MN908947.3 14073 14100 SARS-CoV-2_46_LEFT 2 + CTCAATGGTAACTGGTATGATTTCGGT | ||
| MN908947.3 14427 14457 SARS-CoV-2_46_RIGHT 2 - TGGAACACCATCAACAAATATTTTTCTCAC | ||
| MN908947.3 14375 14407 SARS-CoV-2_47_LEFT 1 + CTTTAATGTTTTATTCTCTACAGTGTTCCCAC | ||
| MN908947.3 14745 14775 SARS-CoV-2_47_RIGHT 1 - ATCCTGAGCAAAGAAGAAGTGTTTTAATTC | ||
| MN908947.3 14700 14725 SARS-CoV-2_48_LEFT 2 + GACTTTGCTGTGTCTAAGGGTTTCT | ||
| MN908947.3 15065 15095 SARS-CoV-2_48_RIGHT 2 - TTCTTTGCACTAATGGCATACTTAAGATTC | ||
| MN908947.3 15016 15045 SARS-CoV-2_49_LEFT 1 + CACTTTTCGCATATACAAAACGTAATGTC | ||
| MN908947.3 15386 15416 SARS-CoV-2_49_RIGHT 1 - CACTCATTAGCTAATCTATAGAAACGGTGT | ||
| MN908947.3 15342 15366 SARS-CoV-2_50_LEFT 2 + TCACTTGTTCTTGCTCGCAAACAT | ||
| MN908947.3 15716 15742 SARS-CoV-2_50_RIGHT 2 - TATTGAAACACACAACAGCATCGTCA | ||
| MN908947.3 15659 15688 SARS-CoV-2_51_LEFT 1 + CTTTGTGAATGAGTTTTACGCATATTTGC | ||
| MN908947.3 16028 16059 SARS-CoV-2_51_RIGHT 1 - AGGATGTTTAGTAAGTGGGTAAGCATCTATA | ||
| MN908947.3 15964 15998 SARS-CoV-2_52_LEFT 2 + GTTTTGTAGATGATATCGTAAAAACAGATGGTAC | ||
| MN908947.3 16331 16364 SARS-CoV-2_52_RIGHT 2 - AAGACTAATTTATGTGATGTTGATATGACATGG | ||
| MN908947.3 16285 16311 SARS-CoV-2_53_LEFT 1 + GTGCTTGCATACGTAGACCATTCTTA | ||
| MN908947.3 16650 16679 SARS-CoV-2_53_RIGHT 1 - GACAGTTTAAATGTCTCCTCAGTAGCTTT | ||
| MN908947.3 16603 16630 SARS-CoV-2_54_LEFT 2 + CTAACACCTGTACTGAAAGACTCAAGC | ||
| MN908947.3 16985 17011 SARS-CoV-2_54_RIGHT 2 - AGATATTGAGTGTTGGGTATAAGCCA | ||
| MN908947.3 16929 16954 SARS-CoV-2_55_LEFT 1 + GTAATGCCATTAAGTGCACCTACAC | ||
| MN908947.3 17301 17329 SARS-CoV-2_55_RIGHT 1 - CAGGCAATGCATTTACAGTACAAAAGAC | ||
| MN908947.3 17182 17212 SARS-CoV-2_56_LEFT 2 + CACTATGTGAGAAGGCATTAAAATATTTGC | ||
| MN908947.3 17560 17582 SARS-CoV-2_56_RIGHT 2 - ACAATTTCAGCAGGACAACGCC | ||
| MN908947.3 17478 17507 SARS-CoV-2_57_LEFT 1 + GGCACACTAGAACCAGAATATTTCAATTC | ||
| MN908947.3 17859 17886 SARS-CoV-2_57_RIGHT 1 - AGTGGTTTGAGTGAATATGACATAGTC | ||
| MN908947.3 17813 17839 SARS-CoV-2_58_LEFT 2 + GGGACTACCAACTCAAACTGTTGATT | ||
| MN908947.3 18181 18212 SARS-CoV-2_58_RIGHT 2 - ATCATAGAGATGAGTCTTCTATAGGTCATGT | ||
| MN908947.3 18121 18153 SARS-CoV-2_59_LEFT 1 + GTGTTGACACTAAATTCAAAACTGAAGGTTTA | ||
| MN908947.3 18504 18527 SARS-CoV-2_59_RIGHT 1 - CGCACTACATTCCAAGGAAGTCC | ||
| MN908947.3 18460 18484 SARS-CoV-2_60_LEFT 2 + CGCCTGGAGATCAATTTAAACACC | ||
| MN908947.3 18835 18860 SARS-CoV-2_60_RIGHT 2 - GCATCACAACTAGCTACATGTGCAT | ||
| MN908947.3 18789 18815 SARS-CoV-2_61_LEFT 1 + GGTAACCTACAAAGCAACCATGATCT | ||
| MN908947.3 19170 19195 SARS-CoV-2_61_RIGHT 1 - TCCAAAATAGGCATACACCATCTGT | ||
| MN908947.3 19101 19134 SARS-CoV-2_62_LEFT 2 + CCTTGTAGTGACAAAGCTTATAAAATAGAAGAA | ||
| MN908947.3 19469 19495 SARS-CoV-2_62_RIGHT 2 - GTCTACAGACAGCACCACCTAAATTG | ||
| MN908947.3 19415 19449 SARS-CoV-2_63_LEFT 1 + AGTGTCAGATATAGATTATGTACCACTAAAGTCT | ||
| MN908947.3 19770 19796 SARS-CoV-2_63_RIGHT 1 - GCCCAAAGCTCAAATGCTACATTAAC | ||
| MN908947.3 19721 19750 SARS-CoV-2_64_LEFT 2 + AGTTGATGGTGTTGATGTAGAATTGTTTG | ||
| MN908947.3 20091 20121 SARS-CoV-2_64_RIGHT 2 - TAATGTGACTCCATTAAGACTAGCTTGTTT | ||
| MN908947.3 20028 20054 SARS-CoV-2_65_LEFT 1 + GCCCGTAATGGTGTTCTTATTACAGA | ||
| MN908947.3 20408 20441 SARS-CoV-2_65_RIGHT 1 - GTACTGTCCATAGGAATAAAATCTTCTAATTCA | ||
| MN908947.3 20358 20388 SARS-CoV-2_66_LEFT 2 + GGTTTACATCTACTGATTGGACTAGCTAAA | ||
| MN908947.3 20729 20758 SARS-CoV-2_66_RIGHT 2 - CACTATCACCATAATTTTGAAGGTCACAC | ||
| MN908947.3 20680 20708 SARS-CoV-2_67_LEFT 1 + GTGTTGCTATGCCTAATCTTTACAAAAT | ||
| MN908947.3 21047 21080 SARS-CoV-2_67_RIGHT 1 - TTTGTAACATTTTTAGTCTTAGGGTCGTACATA | ||
| MN908947.3 20991 21018 SARS-CoV-2_68_LEFT 2 + ATTGGTGATTGTGCAACTGTACATACA | ||
| MN908947.3 21372 21402 SARS-CoV-2_68_RIGHT 2 - ACTCATGTCAAATAAAGAATAGGAAGACAA | ||
| MN908947.3 21322 21352 SARS-CoV-2_69_LEFT 1 + ATGTCATGCATGCAAATTACATATTTTGGA | ||
| MN908947.3 21696 21722 SARS-CoV-2_69_RIGHT 1 - AGTCCTGAGTTGAATGTAAAACTGAG | ||
| MN908947.3 21579 21607 SARS-CoV-2_70_LEFT 2 + TTTATTGCCACTAGTCTCTAGTCAGTGT | ||
| MN908947.3 21927 21960 SARS-CoV-2_70_RIGHT 2 - AATTCACAGACTTTAATAACAACATTAGTAGCG | ||
| MN908947.3 21866 21894 SARS-CoV-2_71_LEFT 1 + GAGGCTGGATTTTTGGTACTACTTTAGA | ||
| MN908947.3 22238 22266 SARS-CoV-2_71_RIGHT 1 - ATGTTAATACCTATTGGCAAATCTACCA | ||
| MN908947.3 22156 22189 SARS-CoV-2_72_LEFT 2 + GGTTATTTTAAAATATATTCTAAGCACACGCCT | ||
| MN908947.3 22517 22547 SARS-CoV-2_72_RIGHT 2 - ATCTAACAATAGATTCTGTTGGTTGGACTC | ||
| MN908947.3 22466 22494 SARS-CoV-2_73_LEFT 1 + CGTTGAAATCCTTCACTGTAGAAAAAGG | ||
| MN908947.3 22839 22866 SARS-CoV-2_73_RIGHT 1 - GCTATAACGCAGCCTGTAAAATCATCT | ||
| MN908947.3 22742 22774 SARS-CoV-2_74_LEFT 2 + ATGTCTATGCAGATTCATTTGTAATTAGAGGT | ||
| MN908947.3 23119 23140 SARS-CoV-2_74_RIGHT 2 - TCCACAAACAGTTGCTGGTGC | ||
| MN908947.3 22922 22954 SARS-CoV-2_75_LEFT 1 + GATTGTTTAGGAAGTCTAATCTCAAACCTTTT | ||
| MN908947.3 23296 23324 SARS-CoV-2_75_RIGHT 1 - TAATGTCAAGAATCTCAAGTGTCTGTGG | ||
| MN908947.3 23229 23258 SARS-CoV-2_76_LEFT 2 + CAAAAAGTTTCTGCCTTTCCAACAATTTG | ||
| MN908947.3 23609 23631 SARS-CoV-2_76_RIGHT 2 - TGACTAGCTACACTACGTGCCC | ||
| MN908947.3 23563 23589 SARS-CoV-2_77_LEFT 1 + GCAGGTATATGCGCTAGTTATCAGAC | ||
| MN908947.3 23914 23944 SARS-CoV-2_77_RIGHT 1 - AATTGGTGGTGTTTTGTAAATTTGTTTGAC | ||
| MN908947.3 23823 23853 SARS-CoV-2_78_LEFT 2 + GCAATATGGCAGTTTTTGTACACAATTAAA | ||
| MN908947.3 24209 24231 SARS-CoV-2_78_RIGHT 2 - GCACCAAAGGTCCAACCAGAAG | ||
| MN908947.3 24160 24189 SARS-CoV-2_79_LEFT 1 + GATGAAATGATTGCTCAATACACTTCTGC | ||
| MN908947.3 24535 24560 SARS-CoV-2_79_RIGHT 1 - TGCCTGTGATCAACCTATCAATTTG | ||
| MN908947.3 24442 24468 SARS-CoV-2_80_LEFT 2 + ACGCTTGTTAAACAACTTAGCTCCAA | ||
| MN908947.3 24815 24839 SARS-CoV-2_80_RIGHT 2 - CTTCACGAGGAAAGTGTGCTTTTC | ||
| MN908947.3 24751 24774 SARS-CoV-2_81_LEFT 1 + CATGTGACTTATGTCCCTGCACA | ||
| MN908947.3 25120 25151 SARS-CoV-2_81_RIGHT 1 - GAGATTCATTTAAATTCTTGGCAACCTCATT | ||
| MN908947.3 25053 25082 SARS-CoV-2_82_LEFT 2 + TGATTTAGGTGACATCTCTGGCATTAATG | ||
| MN908947.3 25423 25452 SARS-CoV-2_82_RIGHT 2 - GATTTCACCTTGCTTCAAAGTTACAGTTC | ||
| MN908947.3 25372 25402 SARS-CoV-2_83_LEFT 1 + CATTACACATAAACGAACTTATGGATTTGT | ||
| MN908947.3 25744 25777 SARS-CoV-2_83_RIGHT 1 - GCCAAAGCCTCATTATTATTCTTACAAAGTTTA | ||
| MN908947.3 25696 25724 SARS-CoV-2_84_LEFT 2 + AAGCCCCTTTTCTCTATCTTTATGCTTT | ||
| MN908947.3 26059 26086 SARS-CoV-2_84_RIGHT 2 - TGAAGAAGGTAACATGTTCAACACCAG | ||
| MN908947.3 26011 26039 SARS-CoV-2_85_LEFT 1 + TCACTTCAGACTATTACCAGCTGTACTC | ||
| MN908947.3 26382 26411 SARS-CoV-2_85_RIGHT 1 - AAAGAAGGTTTTACAAGACTCACGTTAAC | ||
| MN908947.3 26339 26362 SARS-CoV-2_86_LEFT 2 + CATCCTTACTGCGCTTCGATTGT | ||
| MN908947.3 26730 26756 SARS-CoV-2_86_RIGHT 2 - ACCGGTGATCCAATTTATTCTGTAAA | ||
| MN908947.3 26639 26672 SARS-CoV-2_87_LEFT 1 + GCCAACAGGAATAGGTTTTTGTATATAATTAAG | ||
| MN908947.3 27011 27038 SARS-CoV-2_87_RIGHT 1 - TGTAGCAACAGTGATTTCTTTAGGCAG | ||
| MN908947.3 26965 26989 SARS-CoV-2_88_LEFT 2 + TCTTCGTATTGCTGGACACCATCT | ||
| MN908947.3 27342 27372 SARS-CoV-2_88_RIGHT 2 - TGGTTGCTCTTCATCTAATTGAGAATATTT | ||
| MN908947.3 27218 27251 SARS-CoV-2_89_LEFT 1 + CTTTCAGGTTACTATAGCAGAGATATTACTAAT | ||
| MN908947.3 27583 27603 SARS-CoV-2_89_RIGHT 1 - GCCGTCAGGACAAGCAAAAG | ||
| MN908947.3 27530 27558 SARS-CoV-2_90_LEFT 2 + TCATCCTCTAGCTGATAACAAATTTGCA | ||
| MN908947.3 27927 27950 SARS-CoV-2_90_RIGHT 2 - TTCTTGGTGAAATGCAGCTACAG | ||
| MN908947.3 27832 27860 SARS-CoV-2_91_LEFT 1 + TATCTTTTGGTTCTCACTTGAACTGCAA | ||
| MN908947.3 28209 28237 SARS-CoV-2_91_RIGHT 1 - CGAACGTCATGATACTCTAAAAAGTCTT | ||
| MN908947.3 28135 28166 SARS-CoV-2_92_LEFT 2 + TTCCTGTTTACCTTTTACAATTAATTGCCAG | ||
| MN908947.3 28513 28539 SARS-CoV-2_92_RIGHT 2 - CTTCGGTAGTAGCCAATTTGGTCATC | ||
| MN908947.3 28473 28493 SARS-CoV-2_93_LEFT 1 + TCGAGGACAAGGCGTTCCAA | ||
| MN908947.3 28849 28873 SARS-CoV-2_93_RIGHT 1 - GCCTGGAGTTGAATTTCTTGAACT | ||
| MN908947.3 28808 28829 SARS-CoV-2_94_LEFT 2 + GCAGTCAAGCCTCTTCTCGTT | ||
| MN908947.3 29203 29224 SARS-CoV-2_94_RIGHT 2 - CATTCCGAAGAACGCTGAAGC | ||
| MN908947.3 29159 29183 SARS-CoV-2_95_LEFT 1 + CTGATTACAAACATTGGCCGCAAA | ||
| MN908947.3 29538 29559 SARS-CoV-2_95_RIGHT 1 - ATCTGCCTTGTGTGGTCTGCA | ||
| MN908947.3 29493 29515 SARS-CoV-2_96_LEFT 2 + GCAACAATCCATGAGCAGTGCT | ||
| MN908947.3 29840 29873 SARS-CoV-2_96_RIGHT 2 - TTTGTCATTCTCCTAAGAAGCTATTAAAATCAC | ||
| MN908947.3 47 78 SARS-CoV-2_1_LEFT_alt 1 + CTCTTGTAGATCTGTTCTCTAAACGAACTTT | ||
| MN908947.3 419 447 SARS-CoV-2_1_RIGHT_alt 1 - AAAACGCCTTTTTCAACTTCTACTAAGC | ||
| MN908947.3 638 661 SARS-CoV-2_3_LEFT_alt 1 + AGAACGGTAATAAAGGAGCTGGT | ||
| MN908947.3 1574 1596 SARS-CoV-2_6_LEFT_alt 2 + GTGTTGTTGGAGAAGGTTCCGA | ||
| MN908947.3 1945 1972 SARS-CoV-2_6_RIGHT_alt 2 - TATTGTTATAGCGGCCTTCTGTAAAAC | ||
| MN908947.3 9299 9324 SARS-CoV-2_31_LEFT_alt 1 + GATCTTTACCAGGAGTTTTCTGTGG | ||
| MN908947.3 16624 16647 SARS-CoV-2_54_LEFT_alt 2 + TCAAGCTTTTTGCAGCAGAAACG | ||
| MN908947.3 17004 17033 SARS-CoV-2_54_RIGHT_alt 2 - ACATTGCTAGAAAACTCATCTGAGATATT | ||
| MN908947.3 20650 20676 SARS-CoV-2_67_LEFT_alt 1 + AATTACAATCTAGTCAAGCGTGGCAA | ||
| MN908947.3 21018 21051 SARS-CoV-2_67_RIGHT_alt 1 - CATATCACTAATAATGAGATCCCATTTATTAGC | ||
| MN908947.3 25718 25743 SARS-CoV-2_84_LEFT_alt 2 + TGCTTTAGTCTACTTCTTGCAGAGT | ||
| MN908947.3 26107 26131 SARS-CoV-2_84_RIGHT_alt 2 - GAATTTGGACATGTTCTTCAGGCT | ||
| MN908947.3 26593 26621 SARS-CoV-2_87_LEFT_alt 1 + AGGTTTCCTATTCCTTACATGGATTTGT | ||
| MN908947.3 26989 27009 SARS-CoV-2_87_RIGHT_alt 1 - CCTTGATGTCACAGCGTCCT | ||
| MN908947.3 29462 29486 SARS-CoV-2_96_LEFT_alt 2 + CTGCAGATTTGGATGATTTCTCCA |
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