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replikation authored May 4, 2020
1 parent bac0fe6 commit 6fd5241
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions poreCov.nf
Original file line number Diff line number Diff line change
Expand Up @@ -279,7 +279,7 @@ def helpMSG() {
nextflow run replikation/poreCov --fastq 'sample_01.fasta.gz' --cores 14 -profile local,singularity
${c_yellow}Inputs (choose one):${c_reset}
--dir one fast5 dir of a nanopore run conatining multiple samples (barcoded)
--dir one fast5 dir of a nanopore run containing multiple samples (barcoded)
[--dir fast5/ --single] if you only one sample (no barcodes)
${c_dim}(not implemented yet) autorename barcodes via [--barcodeIDs rename.csv]
Per line: 01;samplename${c_reset}
Expand Down Expand Up @@ -334,4 +334,4 @@ def helpMSG() {
singularity
conda (not yet implemented )
""".stripIndent()
}
}

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