fixed stub error for fast5 nanopolish

replikation · May 17, 2024 · 3e05798 · 3e05798
1 parent 13607f8
commit 3e05798
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/poreCov.nf b/poreCov.nf
@@ -355,7 +355,7 @@ workflow {
             // use medaka or nanopolish artic reconstruction
             if (params.nanopolish) { 
                 artic_ncov_np_wf(filtered_reads_ch, dir_input_ch, basecalling_wf.out[1], artic_ncov_np_wf)
-                fasta_input_ch = artic_ncov_np_wf.out.assembly[0]
+                fasta_input_ch = artic_ncov_np_wf.out.assembly
                 }
             else if (!params.nanopolish) { 
                 artic_ncov_wf(filtered_reads_ch, params.artic_normalize)