Skip to content

Commit

Permalink
Update Heatmap_table.Rmd
Browse files Browse the repository at this point in the history
  • Loading branch information
mult1fractal authored Jan 26, 2023
1 parent 95f3348 commit f613d87
Showing 1 changed file with 3 additions and 3 deletions.
6 changes: 3 additions & 3 deletions submodule_report/Heatmap_table.Rmd
Original file line number Diff line number Diff line change
Expand Up @@ -94,8 +94,8 @@ div.blue { background-color:#e6f0ff; border-radius: 5px; padding: 20px;}
# Open your Linux-Terminal
mkdir contigs_of_interest
cd contigs_of_interest
# Copy the downloaded Phage prediction by contig table to the contig_IDs_of_interest -folder
# Copy the input_fasta to the contig_IDs_of_interest -folder
# Copy the downloaded Phage prediction by contig table to the contigs_of_interest -folder
# Copy the input_fasta to the contigs_of_interest -folder
cp WtP_results/your_sample/Input_fasta/your_input_fasta.fa.gz /foo/bar/contigs_of_interest
# Get contig IDs of interest
tail -n+2 final_report.utf8.csv | tr -d '"' | cut -f2 -d"," > contig_IDs_of_interest.txt
Expand All @@ -110,4 +110,4 @@ seqkit grep --pattern-file contig_IDs_of_interest.txt your_input_fasta.fa.gz > c



<a href="#top">Back to top</a>
<a href="#top">Back to top</a>

0 comments on commit f613d87

Please sign in to comment.