latest apache spark #14
Merged
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
… message This PR adds a debugging log for YARN-specific credential providers which is loaded by service loader mechanism. It took me a while to debug if it's actually loaded or not. I had to explicitly set the deprecated configuration and check if that's actually being loaded. The change scope is manually tested. Logs are like: ``` Using the following builtin delegation token providers: hadoopfs, hive, hbase. Using the following YARN-specific credential providers: yarn-test. ``` Author: hyukjinkwon <[email protected]> Closes #21466 from HyukjinKwon/minor-log. Change-Id: I18e2fb8eeb3289b148f24c47bb3130a560a881cf
…ng files ## What changes were proposed in this pull request? 1. Refactor ExecuteWriteTask in FileFormatWriter to reduce common logic and improve readability. After the change, callers only need to call `commit()` or `abort` at the end of task. Also there is less code in `SingleDirectoryWriteTask` and `DynamicPartitionWriteTask`. Definitions of related classes are moved to a new file, and `ExecuteWriteTask` is renamed to `FileFormatDataWriter`. 2. As per code style guide: https://github.com/databricks/scala-style-guide#traversal-and-zipwithindex , we avoid using `for` for looping in [FileFormatWriter](https://github.com/apache/spark/pull/21381/files#diff-3b69eb0963b68c65cfe8075f8a42e850L536) , or `foreach` in [WriteToDataSourceV2Exec](https://github.com/apache/spark/pull/21381/files#diff-6fbe10db766049a395bae2e785e9d56eL119). In such critical code path, using `while` is good for performance. ## How was this patch tested? Existing unit test. I tried the microbenchmark in #21409 | Workload | Before changes(Best/Avg Time(ms)) | After changes(Best/Avg Time(ms)) | | --- | --- | -- | |Output Single Int Column| 2018 / 2043 | 2096 / 2236 | |Output Single Double Column| 1978 / 2043 | 2013 / 2018 | |Output Int and String Column| 6332 / 6706 | 6162 / 6298 | |Output Partitions| 4458 / 5094 | 3792 / 4008 | |Output Buckets| 5695 / 6102 | 5120 / 5154 | Also a microbenchmark on my laptop for general comparison among while/foreach/for : ``` class Writer { var sum = 0L def write(l: Long): Unit = sum += l } def testWhile(iterator: Iterator[Long]): Long = { val w = new Writer while (iterator.hasNext) { w.write(iterator.next()) } w.sum } def testForeach(iterator: Iterator[Long]): Long = { val w = new Writer iterator.foreach(w.write) w.sum } def testFor(iterator: Iterator[Long]): Long = { val w = new Writer for (x <- iterator) { w.write(x) } w.sum } val data = 0L to 100000000L val start = System.nanoTime (0 to 10).foreach(_ => testWhile(data.iterator)) println("benchmark while: " + (System.nanoTime - start)/1000000) val start2 = System.nanoTime (0 to 10).foreach(_ => testForeach(data.iterator)) println("benchmark foreach: " + (System.nanoTime - start2)/1000000) val start3 = System.nanoTime (0 to 10).foreach(_ => testForeach(data.iterator)) println("benchmark for: " + (System.nanoTime - start3)/1000000) ``` Benchmark result: `while`: 15401 ms `foreach`: 43034 ms `for`: 41279 ms Author: Gengliang Wang <[email protected]> Closes #21381 from gengliangwang/refactorExecuteWriteTask.
… assignment ## What changes were proposed in this pull request? Added sections to pandas_udf docs, in the grouped map section, to indicate columns are assigned by position. ## How was this patch tested? NA Author: Bryan Cutler <[email protected]> Closes #21471 from BryanCutler/arrow-doc-pandas_udf-column_by_pos-SPARK-21427.
## What changes were proposed in this pull request? * Adds support for local:// scheme like in k8s case for image based deployments where the jar is already in the image. Affects cluster mode and the mesos dispatcher. Covers also file:// scheme. Keeps the default case where jar resolution happens on the host. ## How was this patch tested? Dispatcher image with the patch, use it to start DC/OS Spark service: skonto/spark-local-disp:test Test image with my application jar located at the root folder: skonto/spark-local:test Dockerfile for that image. From mesosphere/spark:2.3.0-2.2.1-2-hadoop-2.6 COPY spark-examples_2.11-2.2.1.jar / WORKDIR /opt/spark/dist Tests: The following work as expected: * local normal example ``` dcos spark run --submit-args="--conf spark.mesos.appJar.local.resolution.mode=container --conf spark.executor.memory=1g --conf spark.mesos.executor.docker.image=skonto/spark-local:test --conf spark.executor.cores=2 --conf spark.cores.max=8 --class org.apache.spark.examples.SparkPi local:///spark-examples_2.11-2.2.1.jar" ``` * make sure the flag does not affect other uris ``` dcos spark run --submit-args="--conf spark.mesos.appJar.local.resolution.mode=container --conf spark.executor.memory=1g --conf spark.executor.cores=2 --conf spark.cores.max=8 --class org.apache.spark.examples.SparkPi https://s3-eu-west-1.amazonaws.com/fdp-stavros-test/spark-examples_2.11-2.1.1.jar" ``` * normal example no local ``` dcos spark run --submit-args="--conf spark.executor.memory=1g --conf spark.executor.cores=2 --conf spark.cores.max=8 --class org.apache.spark.examples.SparkPi https://s3-eu-west-1.amazonaws.com/fdp-stavros-test/spark-examples_2.11-2.1.1.jar" ``` The following fails * uses local with no setting, default is host. ``` dcos spark run --submit-args="--conf spark.executor.memory=1g --conf spark.mesos.executor.docker.image=skonto/spark-local:test --conf spark.executor.cores=2 --conf spark.cores.max=8 --class org.apache.spark.examples.SparkPi local:///spark-examples_2.11-2.2.1.jar" ```  Author: Stavros Kontopoulos <[email protected]> Closes #21378 from skonto/local-upstream.
… element from array ## What changes were proposed in this pull request? add array_remove to remove all elements that equal element from array ## How was this patch tested? add unit tests Author: Huaxin Gao <[email protected]> Closes #21069 from huaxingao/spark-23920.
…e computed with current committed epoch but not currentBatchId in CP mode ## What changes were proposed in this pull request? Compute the thresholdBatchId to purge metadata based on current committed epoch instead of currentBatchId in CP mode to avoid cleaning all the committed metadata in some case as described in the jira [SPARK-24351](https://issues.apache.org/jira/browse/SPARK-24351). ## How was this patch tested? Add new unit test. Author: Huang Tengfei <[email protected]> Closes #21400 from ivoson/branch-cp-meta.
…regations having the same argument set" This reverts commit 1e46f92.
…lowing executor exits on a Standalone cluster ## What changes were proposed in this pull request? Currently we only clean up the local directories on application removed. However, when executors die and restart repeatedly, many temp files are left untouched in the local directories, which is undesired behavior and could cause disk space used up gradually. We can detect executor death in the Worker, and clean up the non-shuffle files (files not ended with ".index" or ".data") in the local directories, we should not touch the shuffle files since they are expected to be used by the external shuffle service. Scope of this PR is limited to only implement the cleanup logic on a Standalone cluster, we defer to experts familiar with other cluster managers(YARN/Mesos/K8s) to determine whether it's worth to add similar support. ## How was this patch tested? Add new test suite to cover. Author: Xingbo Jiang <[email protected]> Closes #21390 from jiangxb1987/cleanupNonshuffleFiles.
…etes.md ## What changes were proposed in this pull request? PR #20811 introduced a new Spark configuration property `spark.kubernetes.container.image.pullSecrets` for specifying image pull secrets. However, the documentation wasn't updated accordingly. This PR adds the property introduced into running-on-kubernetes.md. ## How was this patch tested? N/A. foxish mccheah please help merge this. Thanks! Author: Yinan Li <[email protected]> Closes #21480 from liyinan926/master.
…mentManagedBuffer This patch eliminates duplicate strings that come from the 'path' field of java.io.File objects created by FileSegmentManagedBuffer. That is, we want to avoid the situation when multiple File instances for the same pathname "foo/bar" are created, each with a separate copy of the "foo/bar" String instance. In some scenarios such duplicate strings may waste a lot of memory (~ 10% of the heap). To avoid that, we intern the pathname with String.intern(), and before that we make sure that it's in a normalized form (contains no "//", "///" etc.) Otherwise, the code in java.io.File would normalize it later, creating a new "foo/bar" String copy. Unfortunately, the normalization code that java.io.File uses internally is in the package-private class java.io.FileSystem, so we cannot call it here directly. ## What changes were proposed in this pull request? Added code to ExternalShuffleBlockResolver.getFile(), that normalizes and then interns the pathname string before passing it to the File() constructor. ## How was this patch tested? Added unit test Author: Misha Dmitriev <[email protected]> Closes #21456 from countmdm/misha/spark-24356.
change runTasks to submitTasks in the TaskSchedulerImpl.scala 's comment Author: xueyu <[email protected]> Author: Xue Yu <[email protected]> Closes #21485 from xueyumusic/fixtypo1.
…s having the same argument set ## What changes were proposed in this pull request? bring back #21443 This is a different approach: just change the check to count distinct columns with `toSet` ## How was this patch tested? a new test to verify the planner behavior. Author: Wenchen Fan <[email protected]> Author: Takeshi Yamamuro <[email protected]> Closes #21487 from cloud-fan/back.
## What changes were proposed in this pull request? Currently column names of headers in CSV files are not checked against provided schema of CSV data. It could cause errors like showed in the [SPARK-23786](https://issues.apache.org/jira/browse/SPARK-23786) and #20894 (comment). I introduced new CSV option - `enforceSchema`. If it is enabled (by default `true`), Spark forcibly applies provided or inferred schema to CSV files. In that case, CSV headers are ignored and not checked against the schema. If `enforceSchema` is set to `false`, additional checks can be performed. For example, if column in CSV header and in the schema have different ordering, the following exception is thrown: ``` java.lang.IllegalArgumentException: CSV file header does not contain the expected fields Header: depth, temperature Schema: temperature, depth CSV file: marina.csv ``` ## How was this patch tested? The changes were tested by existing tests of CSVSuite and by 2 new tests. Author: Maxim Gekk <[email protected]> Author: Maxim Gekk <[email protected]> Closes #20894 from MaxGekk/check-column-names.
## What changes were proposed in this pull request? Add support for date `extract` function: ```sql spark-sql> SELECT EXTRACT(YEAR FROM TIMESTAMP '2000-12-16 12:21:13'); 2000 ``` Supported field same as [Hive](https://github.com/apache/hive/blob/rel/release-2.3.3/ql/src/java/org/apache/hadoop/hive/ql/parse/IdentifiersParser.g#L308-L316): `YEAR`, `QUARTER`, `MONTH`, `WEEK`, `DAY`, `DAYOFWEEK`, `HOUR`, `MINUTE`, `SECOND`. ## How was this patch tested? unit tests Author: Yuming Wang <[email protected]> Closes #21479 from wangyum/SPARK-23903.
…e aggregate functions ## What changes were proposed in this pull request? This PR explicitly prohibits window functions inside aggregates. Currently, this will cause StackOverflow during analysis. See PR #19193 for previous discussion. ## How was this patch tested? This PR comes with a dedicated unit test. Author: aokolnychyi <[email protected]> Closes #21473 from aokolnychyi/fix-stackoverflow-window-funcs.
…NamedValue ## What changes were proposed in this pull request? Extend instrumentation.logNamedValue to support Array input change the logging for "clusterSizes" to new method ## How was this patch tested? N/A Please review http://spark.apache.org/contributing.html before opening a pull request. Author: Lu WANG <[email protected]> Closes #21347 from ludatabricks/SPARK-24290.
…enerateLDAData ## What changes were proposed in this pull request? Using different RNG in all different partitions. ## How was this patch tested? manually Please review http://spark.apache.org/contributing.html before opening a pull request. Author: Lu WANG <[email protected]> Closes #21492 from ludatabricks/SPARK-24300.
## What changes were proposed in this pull request? Implement `_repr_html_` for PySpark while in notebook and add config named "spark.sql.repl.eagerEval.enabled" to control this. The dev list thread for context: http://apache-spark-developers-list.1001551.n3.nabble.com/eager-execution-and-debuggability-td23928.html ## How was this patch tested? New ut in DataFrameSuite and manual test in jupyter. Some screenshot below. **After:**  **Before:**  Author: Yuanjian Li <[email protected]> Closes #21370 from xuanyuanking/SPARK-24215.
Currently, in spark-shell, if the session fails to start, the
user sees a bunch of unrelated errors which are caused by code
in the shell initialization that references the "spark" variable,
which does not exist in that case. Things like:
```
<console>:14: error: not found: value spark
import spark.sql
```
The user is also left with a non-working shell (unless they want
to just write non-Spark Scala or Python code, that is).
This change fails the whole shell session at the point where the
failure occurs, so that the last error message is the one with
the actual information about the failure.
For the python error handling, I moved the session initialization code
to session.py, so that traceback.print_exc() only shows the last error.
Otherwise, the printed exception would contain all previous exceptions
with a message "During handling of the above exception, another
exception occurred", making the actual error kinda hard to parse.
Tested with spark-shell, pyspark (with 2.7 and 3.5), by forcing an
error during SparkContext initialization.
Author: Marcelo Vanzin <[email protected]>
Closes #21368 from vanzin/SPARK-16451.
## What changes were proposed in this pull request? According to the discussion on JIRA. I rewrite the Power Iteration Clustering API in `spark.ml`. ## How was this patch tested? Unit test. Please review http://spark.apache.org/contributing.html before opening a pull request. Author: WeichenXu <[email protected]> Closes #21493 from WeichenXu123/pic_api.
…batch ## What changes were proposed in this pull request? The error occurs when we are recovering from a failure in a no-data batch (say X) that has been planned (i.e. written to offset log) but not executed (i.e. not written to commit log). Upon recovery the following sequence of events happen. 1. `MicroBatchExecution.populateStartOffsets` sets `currentBatchId` to X. Since there was no data in the batch, the `availableOffsets` is same as `committedOffsets`, so `isNewDataAvailable` is `false`. 2. When `MicroBatchExecution.constructNextBatch` is called, ideally it should immediately return true because the next batch has already been constructed. However, the check of whether the batch has been constructed was `if (isNewDataAvailable) return true`. Since the planned batch is a no-data batch, it escaped this check and proceeded to plan the same batch X *once again*. The solution is to have an explicit flag that signifies whether a batch has already been constructed or not. `populateStartOffsets` is going to set the flag appropriately. ## How was this patch tested? new unit test Author: Tathagata Das <[email protected]> Closes #21491 from tdas/SPARK-24453.
… in Cast ## What changes were proposed in this pull request? Sql below will get all partitions from metastore, which put much burden on metastore; ``` CREATE TABLE `partition_test`(`col` int) PARTITIONED BY (`pt` byte) SELECT * FROM partition_test WHERE CAST(pt AS INT)=1 ``` The reason is that the the analyzed attribute `dt` is wrapped in `Cast` and `HiveShim` fails to generate a proper partition filter. This pr proposes to take `Cast` into consideration when generate partition filter. ## How was this patch tested? Test added. This pr proposes to use analyzed expressions in `HiveClientSuite` Author: jinxing <[email protected]> Closes #19602 from jinxing64/SPARK-22384.
## What changes were proposed in this pull request? This PR adds array_join function to SparkR ## How was this patch tested? Add unit test in test_sparkSQL.R Author: Huaxin Gao <[email protected]> Closes #21313 from huaxingao/spark-24187.
## What changes were proposed in this pull request? support bucket pruning when filtering on a single bucketed column on the following predicates - EqualTo, EqualNullSafe, In, And/Or predicates ## How was this patch tested? refactored unit tests to test the above. based on gatorsmile work in e3c75c6 Author: Asher Saban <[email protected]> Author: asaban <[email protected]> Closes #20915 from sabanas/filter-prune-buckets.
## What changes were proposed in this pull request? Implemented eval in SortPrefix expression. ## How was this patch tested? - ran existing sbt SQL tests - added unit test - ran existing Python SQL tests - manual tests: disabling codegen -- patching code to disable beyond what spark.sql.codegen.wholeStage=false can do -- and running sbt SQL tests Author: Bruce Robbins <[email protected]> Closes #21231 from bersprockets/sortprefixeval.
…tering in spark.ml ## What changes were proposed in this pull request? Java example code for Power Iteration Clustering in spark.ml ## How was this patch tested? Locally tested Author: Shahid <[email protected]> Closes #21283 from shahidki31/JavaPicExample.
## What changes were proposed in this pull request? Added example code for Power Iteration Clustering in Spark ML examples Author: Shahid <[email protected]> Closes #21248 from shahidki31/sparkCommit.
…__.py and add ImageSchema into __all__ ## What changes were proposed in this pull request? This PR attaches submodules to ml's `__init__.py` module. Also, adds `ImageSchema` into `image.py` explicitly. ## How was this patch tested? Before: ```python >>> from pyspark import ml >>> ml.image Traceback (most recent call last): File "<stdin>", line 1, in <module> AttributeError: 'module' object has no attribute 'image' >>> ml.image.ImageSchema Traceback (most recent call last): File "<stdin>", line 1, in <module> AttributeError: 'module' object has no attribute 'image' ``` ```python >>> "image" in globals() False >>> from pyspark.ml import * >>> "image" in globals() False >>> image Traceback (most recent call last): File "<stdin>", line 1, in <module> NameError: name 'image' is not defined ``` After: ```python >>> from pyspark import ml >>> ml.image <module 'pyspark.ml.image' from '/.../spark/python/pyspark/ml/image.pyc'> >>> ml.image.ImageSchema <pyspark.ml.image._ImageSchema object at 0x10d973b10> ``` ```python >>> "image" in globals() False >>> from pyspark.ml import * >>> "image" in globals() True >>> image <module 'pyspark.ml.image' from #'/.../spark/python/pyspark/ml/image.pyc'> ``` Author: hyukjinkwon <[email protected]> Closes #21483 from HyukjinKwon/SPARK-24454.
## What changes were proposed in this pull request? Introducing Python Bindings for PySpark. - [x] Running PySpark Jobs - [x] Increased Default Memory Overhead value - [ ] Dependency Management for virtualenv/conda ## How was this patch tested? This patch was tested with - [x] Unit Tests - [x] Integration tests with [this addition](apache-spark-on-k8s/spark-integration#46) ``` KubernetesSuite: - Run SparkPi with no resources - Run SparkPi with a very long application name. - Run SparkPi with a master URL without a scheme. - Run SparkPi with an argument. - Run SparkPi with custom labels, annotations, and environment variables. - Run SparkPi with a test secret mounted into the driver and executor pods - Run extraJVMOptions check on driver - Run SparkRemoteFileTest using a remote data file - Run PySpark on simple pi.py example - Run PySpark with Python2 to test a pyfiles example - Run PySpark with Python3 to test a pyfiles example Run completed in 4 minutes, 28 seconds. Total number of tests run: 11 Suites: completed 2, aborted 0 Tests: succeeded 11, failed 0, canceled 0, ignored 0, pending 0 All tests passed. ``` Author: Ilan Filonenko <[email protected]> Author: Ilan Filonenko <[email protected]> Closes #21092 from ifilonenko/master.
…ng equal keys ## What changes were proposed in this pull request? `EnsureRequirement` in its `reorder` method currently assumes that the same key appears only once in the join condition. This of course might not be the case, and when it is not satisfied, it returns a wrong plan which produces a wrong result of the query. ## How was this patch tested? added UT Author: Marco Gaido <[email protected]> Closes #21529 from mgaido91/SPARK-24495.
…onf when creating pysp…
…ark shell
## What changes were proposed in this pull request?
This PR catches TypeError when testing existence of HiveConf when creating pyspark shell
## How was this patch tested?
Manually tested. Here are the manual test cases:
Build with hive:
```
(pyarrow-dev) Lis-MacBook-Pro:spark icexelloss$ bin/pyspark
Python 3.6.5 | packaged by conda-forge | (default, Apr 6 2018, 13:44:09)
[GCC 4.2.1 Compatible Apple LLVM 6.1.0 (clang-602.0.53)] on darwin
Type "help", "copyright", "credits" or "license" for more information.
18/06/14 14:55:41 WARN NativeCodeLoader: Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
Setting default log level to "WARN".
To adjust logging level use sc.setLogLevel(newLevel). For SparkR, use setLogLevel(newLevel).
Welcome to
____ __
/ __/__ ___ _____/ /__
_\ \/ _ \/ _ `/ __/ '_/
/__ / .__/\_,_/_/ /_/\_\ version 2.4.0-SNAPSHOT
/_/
Using Python version 3.6.5 (default, Apr 6 2018 13:44:09)
SparkSession available as 'spark'.
>>> spark.conf.get('spark.sql.catalogImplementation')
'hive'
```
Build without hive:
```
(pyarrow-dev) Lis-MacBook-Pro:spark icexelloss$ bin/pyspark
Python 3.6.5 | packaged by conda-forge | (default, Apr 6 2018, 13:44:09)
[GCC 4.2.1 Compatible Apple LLVM 6.1.0 (clang-602.0.53)] on darwin
Type "help", "copyright", "credits" or "license" for more information.
18/06/14 15:04:52 WARN NativeCodeLoader: Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
Setting default log level to "WARN".
To adjust logging level use sc.setLogLevel(newLevel). For SparkR, use setLogLevel(newLevel).
Welcome to
____ __
/ __/__ ___ _____/ /__
_\ \/ _ \/ _ `/ __/ '_/
/__ / .__/\_,_/_/ /_/\_\ version 2.4.0-SNAPSHOT
/_/
Using Python version 3.6.5 (default, Apr 6 2018 13:44:09)
SparkSession available as 'spark'.
>>> spark.conf.get('spark.sql.catalogImplementation')
'in-memory'
```
Failed to start shell:
```
(pyarrow-dev) Lis-MacBook-Pro:spark icexelloss$ bin/pyspark
Python 3.6.5 | packaged by conda-forge | (default, Apr 6 2018, 13:44:09)
[GCC 4.2.1 Compatible Apple LLVM 6.1.0 (clang-602.0.53)] on darwin
Type "help", "copyright", "credits" or "license" for more information.
18/06/14 15:07:53 WARN NativeCodeLoader: Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
Setting default log level to "WARN".
To adjust logging level use sc.setLogLevel(newLevel). For SparkR, use setLogLevel(newLevel).
/Users/icexelloss/workspace/spark/python/pyspark/shell.py:45: UserWarning: Failed to initialize Spark session.
warnings.warn("Failed to initialize Spark session.")
Traceback (most recent call last):
File "/Users/icexelloss/workspace/spark/python/pyspark/shell.py", line 41, in <module>
spark = SparkSession._create_shell_session()
File "/Users/icexelloss/workspace/spark/python/pyspark/sql/session.py", line 581, in _create_shell_session
return SparkSession.builder.getOrCreate()
File "/Users/icexelloss/workspace/spark/python/pyspark/sql/session.py", line 168, in getOrCreate
raise py4j.protocol.Py4JError("Fake Py4JError")
py4j.protocol.Py4JError: Fake Py4JError
(pyarrow-dev) Lis-MacBook-Pro:spark icexelloss$
```
Author: Li Jin <[email protected]>
Closes #21569 from icexelloss/SPARK-24563-fix-pyspark-shell-without-hive.
## What changes were proposed in this pull request?
In the PR, I propose to support any DataType represented as DDL string for the from_json function. After the changes, it will be possible to specify `MapType` in SQL like:
```sql
select from_json('{"a":1, "b":2}', 'map<string, int>')
```
and in Scala (similar in other languages)
```scala
val in = Seq("""{"a": {"b": 1}}""").toDS()
val schema = "map<string, map<string, int>>"
val out = in.select(from_json($"value", schema, Map.empty[String, String]))
```
## How was this patch tested?
Added a couple sql tests and modified existing tests for Python and Scala. The former tests were modified because it is not imported for them in which format schema for `from_json` is provided.
Author: Maxim Gekk <[email protected]>
Closes #21550 from MaxGekk/from_json-ddl-schema.
…class is required. ## What changes were proposed in this pull request? With [PR 20925](#20925) now it's not possible to execute the following commands: * run-example * run-example --help * run-example --version * run-example --usage-error * run-example --status ... * run-example --kill ... In this PR the execution will be allowed for the mentioned commands. ## How was this patch tested? Existing unit tests extended + additional written. Author: Gabor Somogyi <[email protected]> Closes #21450 from gaborgsomogyi/SPARK-24319.
…cheduling and lifecycle ## What changes were proposed in this pull request? Previously, the scheduler backend was maintaining state in many places, not only for reading state but also writing to it. For example, state had to be managed in both the watch and in the executor allocator runnable. Furthermore, one had to keep track of multiple hash tables. We can do better here by: 1. Consolidating the places where we manage state. Here, we take inspiration from traditional Kubernetes controllers. These controllers tend to follow a level-triggered mechanism. This means that the controller will continuously monitor the API server via watches and polling, and on periodic passes, the controller will reconcile the current state of the cluster with the desired state. We implement this by introducing the concept of a pod snapshot, which is a given state of the executors in the Kubernetes cluster. We operate periodically on snapshots. To prevent overloading the API server with polling requests to get the state of the cluster (particularly for executor allocation where we want to be checking frequently to get executors to launch without unbearably bad latency), we use watches to populate snapshots by applying observed events to a previous snapshot to get a new snapshot. Whenever we do poll the cluster, the polled state replaces any existing snapshot - this ensures eventual consistency and mirroring of the cluster, as is desired in a level triggered architecture. 2. Storing less specialized in-memory state in general. Previously we were creating hash tables to represent the state of executors. Instead, it's easier to represent state solely by the snapshots. ## How was this patch tested? Integration tests should test there's no regressions end to end. Unit tests to be updated, in particular focusing on different orderings of events, particularly accounting for when events come in unexpected ordering. Author: mcheah <[email protected]> Closes #21366 from mccheah/event-queue-driven-scheduling.
…onversion ## What changes were proposed in this pull request? This removes the v2 optimizer rule for push-down and instead pushes filters and required columns when converting to a physical plan, as suggested by marmbrus. This makes the v2 relation cleaner because the output and filters do not change in the logical plan. A side-effect of this change is that the stats from the logical (optimized) plan no longer reflect pushed filters and projection. This is a temporary state, until the planner gathers stats from the physical plan instead. An alternative to this approach is rdblue@9d3a11e. The first commit was proposed in #21262. This PR replaces #21262. ## How was this patch tested? Existing tests. Author: Ryan Blue <[email protected]> Closes #21503 from rdblue/SPARK-24478-move-push-down-to-physical-conversion.
## What changes were proposed in this pull request? Fix typo in exception raised in Python serializer ## How was this patch tested? No code changes Please review http://spark.apache.org/contributing.html before opening a pull request. Author: Ruben Berenguel Montoro <[email protected]> Closes #21566 from rberenguel/fix_typo_pyspark_serializers.
`WebUI` defines `addStaticHandler` that web UIs don't use (and simply introduce duplication). Let's clean them up and remove duplications. Local build and waiting for Jenkins Author: Jacek Laskowski <[email protected]> Closes #21510 from jaceklaskowski/SPARK-24490-Use-WebUI.addStaticHandler.
… python ## What changes were proposed in this pull request? This PR adds `foreach` for streaming queries in Python. Users will be able to specify their processing logic in two different ways. - As a function that takes a row as input. - As an object that has methods `open`, `process`, and `close` methods. See the python docs in this PR for more details. ## How was this patch tested? Added java and python unit tests Author: Tathagata Das <[email protected]> Closes #21477 from tdas/SPARK-24396.
## What changes were proposed in this pull request? This PR fixes possible overflow in int add or multiply. In particular, their overflows in multiply are detected by [Spotbugs](https://spotbugs.github.io/) The following assignments may cause overflow in right hand side. As a result, the result may be negative. ``` long = int * int long = int + int ``` To avoid this problem, this PR performs cast from int to long in right hand side. ## How was this patch tested? Existing UTs. Author: Kazuaki Ishizaki <[email protected]> Closes #21481 from kiszk/SPARK-24452.
…rySink ## What changes were proposed in this pull request? Provide an option to limit number of rows in a MemorySink. Currently, MemorySink and MemorySinkV2 have unbounded size, meaning that if they're used on big data, they can OOM the stream. This change adds a maxMemorySinkRows option to limit how many rows MemorySink and MemorySinkV2 can hold. By default, they are still unbounded. ## How was this patch tested? Added new unit tests. Author: Mukul Murthy <[email protected]> Closes #21559 from mukulmurthy/SPARK-24525.
## What changes were proposed in this pull request? The supported java.math.BigInteger type is not mentioned in the javadoc of Encoders.bean() ## How was this patch tested? only Javadoc fix Please review http://spark.apache.org/contributing.html before opening a pull request. Author: James Yu <[email protected]> Closes #21544 from yuj/master.
…nd a side-effect ## What changes were proposed in this pull request? Seems checkstyle affects the build in the PR builder in Jenkins. I can't reproduce in my local and seems it can only be reproduced in the PR builder. I was checking the places it goes through and this is just a speculation that checkstyle's compilation in SBT has a side effect to the assembly build. This PR proposes to run the SBT checkstyle after the build. ## How was this patch tested? Jenkins tests. Author: hyukjinkwon <[email protected]> Closes #21579 from HyukjinKwon/investigate-javastyle.
…ues or empty array during JSON schema inference ## What changes were proposed in this pull request? This pr added a new JSON option `dropFieldIfAllNull ` to ignore column of all null values or empty array/struct during JSON schema inference. ## How was this patch tested? Added tests in `JsonSuite`. Author: Takeshi Yamamuro <[email protected]> Author: Xiangrui Meng <[email protected]> Closes #20929 from maropu/SPARK-23772.
…res in the build/mvn script
## What changes were proposed in this pull request?
Fix the call to ${MVN_BIN} to be wrapped in quotes so it will handle having spaces in the path.
## How was this patch tested?
Ran the following to confirm using the build/mvn tool with a space in the build dir now works without error
```
mkdir /tmp/test\ spaces
cd /tmp/test\ spaces
git clone https://github.com/apache/spark.git
cd spark
# Remove all mvn references in PATH so the script will download mvn to the local dir
./build/mvn -DskipTests clean package
```
Please review http://spark.apache.org/contributing.html before opening a pull request.
Author: trystanleftwich <[email protected]>
Closes #21534 from trystanleftwich/SPARK-24526.
## What changes were proposed in this pull request? When creating tuple expression encoders, we should give the serializer expressions of tuple items correct names, so we can have correct output schema when we use such tuple encoders. ## How was this patch tested? Added test. Author: Liang-Chi Hsieh <[email protected]> Closes #21576 from viirya/SPARK-24548.
…physical conversion ## What changes were proposed in this pull request? This is a followup of #21503, to completely move operator pushdown to the planner rule. The code are mostly from #21319 ## How was this patch tested? existing tests Author: Wenchen Fan <[email protected]> Closes #21574 from cloud-fan/followup.
…lly crafted XML to access arbitrary files ## What changes were proposed in this pull request? UDF series UDFXPathXXXX allow users to pass carefully crafted XML to access arbitrary files. Spark does not have built-in access control. When users use the external access control library, users might bypass them and access the file contents. This PR basically patches the Hive fix to Apache Spark. https://issues.apache.org/jira/browse/HIVE-18879 ## How was this patch tested? A unit test case Author: Xiao Li <[email protected]> Closes #21549 from gatorsmile/xpathSecurity.
## What changes were proposed in this pull request?
test("withColumn doesn't invalidate cached dataframe") in CachedTableSuite doesn't not work because:
The UDF is executed and test count incremented when "df.cache()" is called and the subsequent "df.collect()" has no effect on the test result.
This PR fixed this test and add another test for caching UDF.
## How was this patch tested?
Add new tests.
Author: Li Jin <[email protected]>
Closes #21531 from icexelloss/fix-cache-test.
…geExec and InMemoryTableScanExec ## What changes were proposed in this pull request? Currently, ReusedExchange and InMemoryTableScanExec only rewrite output partitioning if child's partitioning is HashPartitioning and do nothing for other partitioning, e.g., RangePartitioning. We should always rewrite it, otherwise, unnecessary shuffle could be introduced like https://issues.apache.org/jira/browse/SPARK-24556. ## How was this patch tested? Add new tests. Author: yucai <[email protected]> Closes #21564 from yucai/SPARK-24556.
## What changes were proposed in this pull request? This PR changes the entrypoint.sh to provide an option to run non spark-on-k8s commands (init, driver, executor) in order to let the user keep with the normal workflow without hacking the image to bypass the entrypoint ## How was this patch tested? This patch was built manually in my local machine and I ran some tests with a combination of ```docker run``` commands. Author: rimolive <[email protected]> Closes #21572 from rimolive/rimolive-spark-24534.
…tput rows of each microbatch as a DataFrame ## What changes were proposed in this pull request? Currently, the micro-batches in the MicroBatchExecution is not exposed to the user through any public API. This was because we did not want to expose the micro-batches, so that all the APIs we expose, we can eventually support them in the Continuous engine. But now that we have better sense of buiding a ContinuousExecution, I am considering adding APIs which will run only the MicroBatchExecution. I have quite a few use cases where exposing the microbatch output as a dataframe is useful. - Pass the output rows of each batch to a library that is designed only the batch jobs (example, uses many ML libraries need to collect() while learning). - Reuse batch data sources for output whose streaming version does not exists (e.g. redshift data source). - Writer the output rows to multiple places by writing twice for each batch. This is not the most elegant thing to do for multiple-output streaming queries but is likely to be better than running two streaming queries processing the same data twice. The proposal is to add a method `foreachBatch(f: Dataset[T] => Unit)` to Scala/Java/Python `DataStreamWriter`. ## How was this patch tested? New unit tests. Author: Tathagata Das <[email protected]> Closes #21571 from tdas/foreachBatch.
## What changes were proposed in this pull request? Change insert input schema type: "insertRelationType" -> "insertRelationType.asNullable", in order to avoid nullable being overridden. ## How was this patch tested? Added one test in InsertSuite. Author: Maryann Xue <[email protected]> Closes #21585 from maryannxue/spark-24583.
## What changes were proposed in this pull request? When a `union` is invoked on several RDDs of which one is an empty RDD, the result of the operation is a `UnionRDD`. This causes an unneeded extra-shuffle when all the other RDDs have the same partitioning. The PR ignores incoming empty RDDs in the union method. ## How was this patch tested? added UT Author: Marco Gaido <[email protected]> Closes #21333 from mgaido91/SPARK-23778.
## What changes were proposed in this pull request? This patch is removing invalid comment from SparkStrategies, given that TODO-like comment is no longer preferred one as the comment: #21388 (comment) Removing invalid comment will prevent contributors to spend their times which is not going to be merged. ## How was this patch tested? N/A Author: Jungtaek Lim <[email protected]> Closes #21595 from HeartSaVioR/MINOR-remove-invalid-comment-on-spark-strategies.
…G clauses ## What changes were proposed in this pull request? As discussed [before](#19193 (comment)), this PR prohibits window expressions inside WHERE and HAVING clauses. ## How was this patch tested? This PR comes with a dedicated unit test. Author: aokolnychyi <[email protected]> Closes #21580 from aokolnychyi/spark-24575.
## What changes were proposed in this pull request? This PR tries to fix the performance regression introduced by SPARK-21517. In our production job, we performed many parallel computations, with high possibility, some task could be scheduled to a host-2 where it needs to read the cache block data from host-1. Often, this big transfer makes the cluster suffer time out issue (it will retry 3 times, each with 120s timeout, and then do recompute to put the cache block into the local MemoryStore). The root cause is that we don't do `consolidateIfNeeded` anymore as we are using ``` Unpooled.wrappedBuffer(chunks.length, getChunks(): _*) ``` in ChunkedByteBuffer. If we have many small chunks, it could cause the `buf.notBuffer(...)` have very bad performance in the case that we have to call `copyByteBuf(...)` many times. ## How was this patch tested? Existing unit tests and also test in production Author: Wenbo Zhao <[email protected]> Closes #21593 from WenboZhao/spark-24578.
…out cache and don't forget to push spark-py container. ## What changes were proposed in this pull request? https://issues.apache.org/jira/browse/SPARK-24547 TL;DR from JIRA issue: - First time I generated images for 2.4.0 Docker was using it's cache, so actually when running jobs, old jars where still in the Docker image. This produces errors like this in the executors: `java.io.InvalidClassException: org.apache.spark.storage.BlockManagerId; local class incompatible: stream classdesc serialVersionUID = 6155820641931972169, local class serialVersionUID = -3720498261147521051` - The second problem was that the spark container is pushed, but the spark-py container wasn't yet. This was just forgotten in the initial PR. - A third problem I also ran into because I had an older docker was #21551 so I have not included a fix for that in this ticket. ## How was this patch tested? I've tested it on my own Spark on k8s deployment. Author: Ray Burgemeestre <[email protected]> Closes #21555 from rayburgemeestre/SPARK-24547.
## What changes were proposed in this pull request? Add array_distinct to remove duplicate value from the array. ## How was this patch tested? Add unit tests Author: Huaxin Gao <[email protected]> Closes #21050 from huaxingao/spark-23912.
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
What changes were proposed in this pull request?
(Please fill in changes proposed in this fix)
How was this patch tested?
(Please explain how this patch was tested. E.g. unit tests, integration tests, manual tests)
(If this patch involves UI changes, please attach a screenshot; otherwise, remove this)
Please review http://spark.apache.org/contributing.html before opening a pull request.