As covid hub forecasts function #200
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| name: R-CMD-check | |
| on: pull_request | |
| jobs: | |
| R-CMD-check: | |
| runs-on: macOS-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Cache R packages | |
| uses: actions/cache@v1 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: r-${{ hashFiles('DESCRIPTION') }} | |
| - name: Install dependencies | |
| run: | | |
| install.packages(c("remotes","devtools","rmarkdown","tidyverse","DT","here","RSocrata")) | |
| devtools::install_github("epiforecasts/scoringutils") | |
| remotes::install_deps(dependencies = NA) | |
| shell: Rscript {0} | |
| - name: Install zoltr | |
| run: | | |
| devtools::install_github("reichlab/zoltr") | |
| devtools::install() | |
| shell: Rscript {0} | |
| - name: Checkout covidData | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: reichlab/covidData | |
| path: covidData | |
| - name: Install covidData | |
| run: make recent_data | |
| working-directory: ./covidData/code/data-processing | |
| - name: Check | |
| run: | | |
| devtools::check(args = c("--no-tests", "--no-manual", "--no-vignettes"),error_on = "error") | |
| shell: Rscript {0} | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@main | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: check |