Changes

Revision history for NGS-Tools-Pindel

0.01    2014-03-11
        Initial version of the Pindel Perl API.

0.02    2014-03-13
        Added Pindel deletion and small insertion file parser and converter
        to a tabular format for handling in R.

0.03    2014-03-21
        Added a somatic caller in the Postprocessing.pm Moose role.  This uses
        minimal filtering (i.e. remove any indels greater than 1). 

0.04    2014-03-22
        Moved Role.pm to Role/Pipeline.pm.

0.05    2014-03-24
        Updated hash for somatic calls in Postprocessing.pm to include sample name.

0.06    2014-03-25
        Fixed conversion script, missing sample parameter.

0.07    2014-03-27
        Added an option to pass a "filter" argument to the method call_pindel_somatic.  If passed as 'TRUE' then apply filters to the indel call which is currently set to single base indels.  Default is no filtering.

0.08    2015-07-30
        code cleanup, general bug fixes