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1. NGS-Tools-Mutect NGS-Tools-Mutect Public archive

   Perl wrapper code for the MuTect somatic classifier

   Perl 1

2. plotting.general plotting.general Public

   Publication ready plotting functions using ggplot2

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3. NGS.Tools.BICseq NGS.Tools.BICseq Public archive

   A custom R package that wraps the BICseq copy number calling algorithm.

   R 1

4. ncov_parser ncov_parser Public archive

   A set of libraries for parsing genomic data from the ncov-tools project

   Python 1 1

5. ncov2019-artic-nf ncov2019-artic-nf Public

   Forked from connor-lab/ncov2019-artic-nf

   A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019

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6. NGS-Tools-Pindel NGS-Tools-Pindel Public archive

   Perl package for Pindel INDEL caller

   Perl