Flywheel Gear for optiBET

optiBET : https://montilab.psych.ucla.edu/fmri-wiki/optibet/

optiBET is a shell script to perform brain-extractions even in patients brain, where extensive pathology is present.

Citation: Lutkenhoff, E. S., Rosenberg, M., Chiang, J., Zhang, K., Pickard, J. D., Owen, A. M., & Monti, M. M. (2014). Optimized brain extraction for pathological brains (optiBET). PloS one, 9(12), e115551. https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0115551

FSL Brain Extraction Tool (BET): https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/BET/UserGuide

Citation: M. Jenkinson, M. Pechaud, and S. Smith. BET2: MR-based estimation of brain, skull and scalp surfaces. In Eleventh Annual Meeting of the Organization for Human Brain Mapping, 2005.

AFNI 3dSkullStrip: https://afni.nimh.nih.gov/pub/dist/doc/program_help/3dSkullStrip.html

Citation: Cox RW (1996). AFNI: software for analysis and visualization of functional magnetic resonance neuroimages. Comput Biomed Res 29(3):162-173. doi:10.1006/cbmr.1996.0014 https://pubmed.ncbi.nlm.nih.gov/8812068/

Gear info:

Developed for use by the Neuroimaging of Coma and Consciousness Laboratory at Massachusetts General Hospital.

Developer: [email protected]

NICC: https://www.comarecoverylab.org/