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Clean up Thrust includes. #4675

Merged
merged 11 commits into from
Jul 7, 2022
1 change: 1 addition & 0 deletions cpp/src/arima/batched_arima.cu
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Expand Up @@ -20,6 +20,7 @@
#include <vector>

#include <thrust/device_ptr.h>
#include <thrust/execution_policy.h>
#include <thrust/fill.h>
#include <thrust/for_each.h>
#include <thrust/iterator/counting_iterator.h>
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1 change: 1 addition & 0 deletions cpp/src/arima/batched_kalman.cu
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Expand Up @@ -20,6 +20,7 @@
#include <cuml/tsa/batched_kalman.hpp>

#include <cub/cub.cuh>
#include <thrust/execution_policy.h>
#include <thrust/for_each.h>
#include <thrust/iterator/counting_iterator.h>

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5 changes: 4 additions & 1 deletion cpp/src/dbscan/corepoints/compute.cuh
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@@ -1,5 +1,5 @@
/*
* Copyright (c) 2021, NVIDIA CORPORATION.
* Copyright (c) 2021-2022, NVIDIA CORPORATION.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
Expand All @@ -18,6 +18,9 @@

#include <raft/handle.hpp>

#include <thrust/for_each.h>
#include <thrust/iterator/counting_iterator.h>

namespace ML {
namespace Dbscan {
namespace CorePoints {
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5 changes: 5 additions & 0 deletions cpp/src/dbscan/runner.cuh
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Expand Up @@ -34,6 +34,11 @@

#include <label/classlabels.cuh>

#include <thrust/copy.h>
#include <thrust/device_ptr.h>
#include <thrust/fill.h>
#include <thrust/iterator/counting_iterator.h>

#include <cstddef>

namespace ML {
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3 changes: 3 additions & 0 deletions cpp/src/decisiontree/batched-levelalgo/kernels/quantiles.cu
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Expand Up @@ -16,6 +16,9 @@
*/
#include "../quantiles.cuh"

#include <thrust/execution_policy.h>
#include <thrust/unique.h>

namespace ML {
namespace DT {

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5 changes: 5 additions & 0 deletions cpp/src/explainer/tree_shap.cu
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Expand Up @@ -28,6 +28,11 @@
#include <raft/span.hpp>
#include <rmm/device_uvector.hpp>
#include <thrust/device_ptr.h>
#include <thrust/device_vector.h>
#include <thrust/execution_policy.h>
#include <thrust/for_each.h>
#include <thrust/iterator/counting_iterator.h>
#include <thrust/memory.h>
#include <treelite/tree.h>
#include <type_traits>
#include <variant>
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2 changes: 1 addition & 1 deletion cpp/src/fil/fil.cu
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Expand Up @@ -581,7 +581,7 @@ void check_params(const forest_params_t* params, bool dense)
ASSERT(params->blocks_per_sm >= 0, "blocks_per_sm must be nonnegative");
ASSERT(params->n_items >= 0, "n_items must be non-negative");
ASSERT(params->threads_per_tree > 0, "threads_per_tree must be positive");
ASSERT(thrust::detail::is_power_of_2(params->threads_per_tree),
ASSERT((params->threads_per_tree & (params->threads_per_tree - 1)) == 0,
"threads_per_tree must be a power of 2");
ASSERT(params->threads_per_tree <= FIL_TPB,
"threads_per_tree must not "
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2 changes: 2 additions & 0 deletions cpp/src/genetic/fitness.cuh
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Expand Up @@ -34,6 +34,8 @@
#include <thrust/device_vector.h>
#include <thrust/functional.h>
#include <thrust/iterator/permutation_iterator.h>
#include <thrust/memory.h>
#include <thrust/scan.h>
#include <thrust/sequence.h>
#include <thrust/sort.h>
#include <thrust/transform.h>
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5 changes: 5 additions & 0 deletions cpp/src/glm/qn/glm_base.cuh
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Expand Up @@ -24,6 +24,11 @@
#include <raft/linalg/map_then_reduce.hpp>
#include <raft/linalg/matrix_vector_op.hpp>
#include <raft/stats/mean.hpp>

#include <thrust/execution_policy.h>
#include <thrust/functional.h>
#include <thrust/reduce.h>

#include <vector>

namespace ML {
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8 changes: 8 additions & 0 deletions cpp/src/hdbscan/condensed_hierarchy.cu
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Expand Up @@ -27,9 +27,17 @@
#include <raft/sparse/convert/csr.hpp>
#include <raft/sparse/op/sort.hpp>

#include <thrust/copy.h>
#include <thrust/device_ptr.h>
#include <thrust/execution_policy.h>
#include <thrust/extrema.h>
#include <thrust/functional.h>
#include <thrust/iterator/zip_iterator.h>
#include <thrust/reduce.h>
#include <thrust/sort.h>
#include <thrust/transform.h>
#include <thrust/transform_reduce.h>
#include <thrust/tuple.h>

#include <cuml/cluster/hdbscan.hpp>

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4 changes: 4 additions & 0 deletions cpp/src/hdbscan/detail/condense.cuh
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Expand Up @@ -30,7 +30,11 @@

#include <cuml/cluster/hdbscan.hpp>

#include <thrust/copy.h>
#include <thrust/device_ptr.h>
#include <thrust/execution_policy.h>
#include <thrust/extrema.h>
#include <thrust/fill.h>
#include <thrust/reduce.h>

namespace ML {
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2 changes: 2 additions & 0 deletions cpp/src/hdbscan/detail/extract.cuh
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Expand Up @@ -32,7 +32,9 @@
#include <rmm/device_uvector.hpp>
#include <rmm/exec_policy.hpp>

#include <thrust/device_ptr.h>
#include <thrust/execution_policy.h>
#include <thrust/extrema.h>
#include <thrust/for_each.h>
#include <thrust/reduce.h>
#include <thrust/sort.h>
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2 changes: 2 additions & 0 deletions cpp/src/hdbscan/detail/membership.cuh
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Expand Up @@ -33,7 +33,9 @@
#include <algorithm>

#include <thrust/execution_policy.h>
#include <thrust/fill.h>
#include <thrust/for_each.h>
#include <thrust/iterator/counting_iterator.h>
#include <thrust/reduce.h>
#include <thrust/sort.h>
#include <thrust/transform.h>
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3 changes: 3 additions & 0 deletions cpp/src/hdbscan/detail/reachability.cuh
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Expand Up @@ -34,7 +34,10 @@
#include <cuml/neighbors/knn.hpp>
#include <raft/distance/distance.hpp>

#include <thrust/iterator/counting_iterator.h>
#include <thrust/iterator/zip_iterator.h>
#include <thrust/transform.h>
#include <thrust/tuple.h>

namespace ML {
namespace HDBSCAN {
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7 changes: 7 additions & 0 deletions cpp/src/hdbscan/detail/select.cuh
Original file line number Diff line number Diff line change
Expand Up @@ -32,11 +32,18 @@

#include <algorithm>

#include <thrust/copy.h>
#include <thrust/execution_policy.h>
#include <thrust/fill.h>
#include <thrust/for_each.h>
#include <thrust/functional.h>
#include <thrust/iterator/counting_iterator.h>
#include <thrust/iterator/zip_iterator.h>
#include <thrust/reduce.h>
#include <thrust/sort.h>
#include <thrust/transform.h>
#include <thrust/transform_reduce.h>
#include <thrust/tuple.h>

#include <rmm/device_uvector.hpp>
#include <rmm/exec_policy.hpp>
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4 changes: 4 additions & 0 deletions cpp/src/hdbscan/detail/stabilities.cuh
Original file line number Diff line number Diff line change
Expand Up @@ -33,10 +33,14 @@
#include <algorithm>

#include <thrust/execution_policy.h>
#include <thrust/fill.h>
#include <thrust/for_each.h>
#include <thrust/iterator/counting_iterator.h>
#include <thrust/iterator/zip_iterator.h>
#include <thrust/reduce.h>
#include <thrust/sort.h>
#include <thrust/transform.h>
#include <thrust/tuple.h>

#include <rmm/device_uvector.hpp>
#include <rmm/exec_policy.hpp>
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7 changes: 6 additions & 1 deletion cpp/src/hdbscan/detail/utils.h
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Expand Up @@ -31,11 +31,16 @@

#include "../condensed_hierarchy.cu"

#include <thrust/copy.h>
#include <thrust/execution_policy.h>
#include <thrust/for_each.h>
#include <thrust/functional.h>
#include <thrust/iterator/zip_iterator.h>
#include <thrust/reduce.h>
#include <thrust/sort.h>
#include <thrust/transform.h>
#include <thrust/transform_reduce.h>
#include <thrust/tuple.h>

#include <rmm/device_uvector.hpp>
#include <rmm/exec_policy.hpp>
Expand Down Expand Up @@ -186,4 +191,4 @@ void parent_csr(const raft::handle_t& handle,
}; // namespace Utils
}; // namespace detail
}; // namespace HDBSCAN
}; // namespace ML
}; // namespace ML
4 changes: 4 additions & 0 deletions cpp/src/hdbscan/runner.h
Original file line number Diff line number Diff line change
Expand Up @@ -32,6 +32,10 @@
#include "detail/reachability.cuh"
#include <cuml/cluster/hdbscan.hpp>

#include <thrust/device_ptr.h>
#include <thrust/extrema.h>
#include <thrust/transform.h>

namespace ML {
namespace HDBSCAN {

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5 changes: 5 additions & 0 deletions cpp/src/hierarchy/pw_dist_graph.cuh
Original file line number Diff line number Diff line change
Expand Up @@ -33,8 +33,13 @@

#include <thrust/device_ptr.h>
#include <thrust/execution_policy.h>
#include <thrust/iterator/counting_iterator.h>
#include <thrust/iterator/zip_iterator.h>
#include <thrust/scan.h>
#include <thrust/sequence.h>
#include <thrust/sort.h>
#include <thrust/transform.h>
#include <thrust/tuple.h>

#include <limits>

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6 changes: 6 additions & 0 deletions cpp/src/kmeans/kmeans_mg_impl.cuh
Original file line number Diff line number Diff line change
Expand Up @@ -20,6 +20,12 @@
#include <rmm/device_scalar.hpp>
#include <rmm/device_uvector.hpp>

#include <thrust/execution_policy.h>
#include <thrust/fill.h>
#include <thrust/reduce.h>
#include <thrust/scan.h>
#include <thrust/transform.h>

#include "common.cuh"
#include "sg_impl.cuh"

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3 changes: 3 additions & 0 deletions cpp/src/kmeans/sg_impl.cuh
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Expand Up @@ -22,6 +22,9 @@
#include <rmm/device_scalar.hpp>
#include <rmm/device_uvector.hpp>

#include <thrust/fill.h>
#include <thrust/transform.h>

namespace ML {

namespace kmeans {
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2 changes: 2 additions & 0 deletions cpp/src/pca/sign_flip_mg.cu
Original file line number Diff line number Diff line change
Expand Up @@ -27,6 +27,8 @@

#include <thrust/device_vector.h>
#include <thrust/execution_policy.h>
#include <thrust/for_each.h>
#include <thrust/iterator/counting_iterator.h>

#include <cstddef>

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8 changes: 5 additions & 3 deletions cpp/src/randomforest/randomforest.cuh
Original file line number Diff line number Diff line change
Expand Up @@ -16,17 +16,19 @@

#pragma once

#include <raft/common/nvtx.hpp>

#include <decisiontree/batched-levelalgo/quantiles.cuh>
#include <decisiontree/decisiontree.cuh>
#include <decisiontree/treelite_util.h>

#include <metrics/scores.cuh>

#include <raft/common/nvtx.hpp>
#include <raft/cudart_utils.h>
#include <raft/random/permute.hpp>
#include <raft/random/rng.cuh>

#include <raft/cudart_utils.h>
#include <thrust/execution_policy.h>
#include <thrust/sequence.h>

#ifdef _OPENMP
#include <omp.h>
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3 changes: 3 additions & 0 deletions cpp/src/solver/lars_impl.cuh
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Expand Up @@ -37,6 +37,9 @@
#include <rmm/device_uvector.hpp>
#include <thrust/copy.h>
#include <thrust/device_ptr.h>
#include <thrust/execution_policy.h>
#include <thrust/extrema.h>
#include <thrust/fill.h>
#include <thrust/iterator/counting_iterator.h>
#include <thrust/sequence.h>
#include <thrust/sort.h>
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2 changes: 2 additions & 0 deletions cpp/src/svm/linear.cu
Original file line number Diff line number Diff line change
Expand Up @@ -36,8 +36,10 @@
#include <rmm/device_uvector.hpp>
#include <thrust/copy.h>
#include <thrust/device_ptr.h>
#include <thrust/execution_policy.h>
#include <thrust/fill.h>
#include <thrust/iterator/counting_iterator.h>
#include <thrust/tuple.h>

#include <glm/ols.cuh>
#include <glm/qn/qn.cuh>
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3 changes: 3 additions & 0 deletions cpp/src/svm/smosolver.cuh
Original file line number Diff line number Diff line change
Expand Up @@ -32,8 +32,11 @@
#include <raft/cuda_utils.cuh>
#include <raft/cudart_utils.h>
#include <string>
#include <thrust/copy.h>
#include <thrust/device_ptr.h>
#include <thrust/execution_policy.h>
#include <thrust/fill.h>
#include <thrust/iterator/constant_iterator.h>
#include <type_traits>

#include "kernelcache.cuh"
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1 change: 1 addition & 0 deletions cpp/src/svm/svc_impl.cuh
Original file line number Diff line number Diff line change
Expand Up @@ -38,6 +38,7 @@
#include <rmm/mr/device/per_device_resource.hpp>
#include <thrust/copy.h>
#include <thrust/device_ptr.h>
#include <thrust/execution_policy.h>
#include <thrust/iterator/counting_iterator.h>

namespace ML {
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2 changes: 2 additions & 0 deletions cpp/src/svm/workingset.cuh
Original file line number Diff line number Diff line change
Expand Up @@ -36,7 +36,9 @@
#include <thrust/device_ptr.h>
#include <thrust/iterator/permutation_iterator.h>

#include <thrust/copy.h>
#include <thrust/device_ptr.h>
#include <thrust/execution_policy.h>
#include <thrust/iterator/permutation_iterator.h>

#include <cub/cub.cuh>
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4 changes: 4 additions & 0 deletions cpp/src/tsne/barnes_hut_tsne.cuh
Original file line number Diff line number Diff line change
Expand Up @@ -22,6 +22,10 @@
#include <raft/cudart_utils.h>
#include <raft/linalg/eltwise.hpp>

#include <thrust/device_ptr.h>
#include <thrust/execution_policy.h>
#include <thrust/fill.h>

namespace ML {
namespace TSNE {

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3 changes: 3 additions & 0 deletions cpp/src/tsne/distances.cuh
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Expand Up @@ -34,6 +34,9 @@
#include <rmm/device_uvector.hpp>
#include <rmm/exec_policy.hpp>

#include <thrust/functional.h>
#include <thrust/transform_reduce.h>

namespace ML {
namespace TSNE {

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4 changes: 4 additions & 0 deletions cpp/src/tsne/exact_kernels.cuh
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Expand Up @@ -21,6 +21,10 @@
#include <raft/cudart_utils.h>
#include <raft/linalg/eltwise.hpp>

#include <thrust/device_ptr.h>
#include <thrust/execution_policy.h>
#include <thrust/reduce.h>

#define restrict __restrict__

namespace ML {
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4 changes: 4 additions & 0 deletions cpp/src/tsne/exact_tsne.cuh
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Expand Up @@ -20,6 +20,10 @@
#include <cuml/common/logger.hpp>
#include <raft/cudart_utils.h>

#include <thrust/device_ptr.h>
#include <thrust/execution_policy.h>
#include <thrust/fill.h>

namespace ML {
namespace TSNE {

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