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CuGraph+PyG Wrappers and Loaders #2567

Merged
merged 84 commits into from
Aug 31, 2022
Merged

CuGraph+PyG Wrappers and Loaders #2567

merged 84 commits into from
Aug 31, 2022

Commits on Jun 30, 2022

  1. Address CuGraphStorage reviews

    @VibhuJawa
    VibhuJawa committed Jun 30, 2022
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Commits on Jul 7, 2022

  1. plc graph creation

    @alexbarghi-nv
    alexbarghi-nv committed Jul 7, 2022
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  2. remove useless files

    @alexbarghi-nv
    alexbarghi-nv committed Jul 7, 2022
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  3. fix style

    @alexbarghi-nv
    alexbarghi-nv committed Jul 7, 2022
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  4. remove whitespace

    @alexbarghi-nv
    alexbarghi-nv committed Jul 7, 2022
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  5. add tests

    @alexbarghi-nv
    alexbarghi-nv committed Jul 7, 2022
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  6. remove cufile

    @alexbarghi-nv
    alexbarghi-nv committed Jul 7, 2022
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  7. add newlines

    @alexbarghi-nv
    alexbarghi-nv committed Jul 7, 2022
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Commits on Jul 8, 2022

  1. test fixes

    @alexbarghi-nv
    alexbarghi-nv committed Jul 8, 2022
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  2. working ndata,edata with all the updates

    @VibhuJawa
    VibhuJawa committed Jul 8, 2022
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  3. fixed style checks

    @VibhuJawa
    VibhuJawa committed Jul 8, 2022
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  4. style

    @alexbarghi-nv
    alexbarghi-nv committed Jul 8, 2022
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  5. style

    @alexbarghi-nv
    alexbarghi-nv committed Jul 8, 2022
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  6. add type checking for weights

    @alexbarghi-nv
    alexbarghi-nv committed Jul 8, 2022
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  7. Add CuGraphStore tests

    @VibhuJawa
    VibhuJawa committed Jul 8, 2022
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  8. Fixed Style

    @VibhuJawa
    VibhuJawa committed Jul 8, 2022
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Commits on Jul 11, 2022

  1. add sg bfs, fix arg in mg bfs

    @alexbarghi-nv
    alexbarghi-nv committed Jul 11, 2022
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  2. remove useless files

    @alexbarghi-nv
    alexbarghi-nv committed Jul 11, 2022
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  3. neighbor sampling using stored plc graph

    @alexbarghi-nv
    alexbarghi-nv committed Jul 11, 2022
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  4. style

    @alexbarghi-nv
    alexbarghi-nv committed Jul 11, 2022
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  5. style

    @alexbarghi-nv
    alexbarghi-nv committed Jul 11, 2022
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  6. Added graph_store.py and test_graph_store.py

    @VibhuJawa
    VibhuJawa committed Jul 11, 2022
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  7. stop hanging for mg bfs, sampling

    @alexbarghi-nv
    alexbarghi-nv committed Jul 11, 2022
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  8. style

    @alexbarghi-nv
    alexbarghi-nv committed Jul 11, 2022
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  9. cugraph

    @alexbarghi-nv
    alexbarghi-nv committed Jul 11, 2022
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Commits on Jul 13, 2022

  1. fix pytorch import error

    @VibhuJawa
    VibhuJawa committed Jul 13, 2022
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  2. Fix to(device) for cupy

    @VibhuJawa
    VibhuJawa committed Jul 13, 2022
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Commits on Jul 15, 2022

  1. minor

    @alexbarghi-nv
    alexbarghi-nv committed Jul 15, 2022
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  2. remove cufile

    @alexbarghi-nv
    alexbarghi-nv committed Jul 15, 2022
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  3. Merge branch 'address_CuGraphStorage' of https://github.com/vibhujawa… 

    …/cugraph into cugraph-pyg
    @alexbarghi-nv
    alexbarghi-nv committed Jul 15, 2022
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  4. Merge branch 'branch-22.08' of https://github.com/rapidsai/cugraph in… 

    …to cugraph-pyg
    @alexbarghi-nv
    alexbarghi-nv committed Jul 15, 2022
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  5. add cugraph pyg code

    @alexbarghi-nv
    alexbarghi-nv committed Jul 15, 2022
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  6. Added options to extract_subgraph() to bypass renumbering and adding … 

    …edge_data to extraced subgraph, fixed issue with internal weight column being returned by property names API, added tests for new features and bug fix.
    @rlratzel
    rlratzel committed Jul 15, 2022
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  7. flake8 fixes.

    @rlratzel
    rlratzel committed Jul 15, 2022
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Commits on Jul 16, 2022

  1. Added code and tests for PG.num_vertices_with_properties attribute, w… 

    …hich returns the number of verts that have properties (different than the number of verts). This is needed for GNN use cases.
    @rlratzel
    rlratzel committed Jul 16, 2022
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  2. Added code and test for handling no vertex data when accessing num_ve… 

    …rtices_with_properties.
    @rlratzel
    rlratzel committed Jul 16, 2022
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Commits on Jul 18, 2022

  1. Merge branch 'branch-22.08-pg_updates_for_gnns' of https://github.com… 

    …/rlratzel/cugraph into cugraph-pyg
    @alexbarghi-nv
    alexbarghi-nv committed Jul 18, 2022
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Commits on Jul 21, 2022

  1. cugraph-pyg

    @alexbarghi-nv
    alexbarghi-nv committed Jul 21, 2022
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  2. blergh

    @alexbarghi-nv
    alexbarghi-nv committed Jul 21, 2022
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Commits on Jul 22, 2022

  1. commit changes

    @alexbarghi-nv
    alexbarghi-nv committed Jul 22, 2022
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Commits on Jul 27, 2022

  1. minor

    @alexbarghi-nv
    alexbarghi-nv committed Jul 27, 2022
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  2. Fix merge conflict

    @alexbarghi-nv
    alexbarghi-nv committed Jul 27, 2022
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Commits on Aug 1, 2022

  1. Merge branch 'branch-22.08' of https://github.com/rapidsai/cugraph in… 

    …to cugraph-pyg
    @alexbarghi-nv
    alexbarghi-nv committed Aug 1, 2022
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Commits on Aug 2, 2022

  1. fix non-deterministic bug in uniform neighborhood sampling (bad memor… 

    …y reference)
    @ChuckHastings
    ChuckHastings committed Aug 2, 2022
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  2. fix clang-format issues

    @ChuckHastings
    ChuckHastings committed Aug 2, 2022
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  3. Merge branch 'fix_uniform_neighborhood_sample_bug' into cugraph-pyg

    @alexbarghi-nv
    alexbarghi-nv committed Aug 2, 2022
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Commits on Aug 3, 2022

  1. clean up and add graph sage example notebook

    @alexbarghi-nv
    alexbarghi-nv committed Aug 3, 2022
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  2. remove garbage from notebook

    @alexbarghi-nv
    alexbarghi-nv committed Aug 3, 2022
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Commits on Aug 11, 2022

  1. Merge branch 'branch-22.08' of https://github.com/rapidsai/cugraph in… 

    …to cugraph-pyg
    @alexbarghi-nv
    alexbarghi-nv committed Aug 11, 2022
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  2. updates, mg, hetero

    @alexbarghi-nv
    alexbarghi-nv committed Aug 11, 2022
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  3. remove old api classes

    @alexbarghi-nv
    alexbarghi-nv committed Aug 11, 2022
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  4. Merge branch 'branch-22.10' of https://github.com/rapidsai/cugraph in… 

    …to cugraph-pyg-new-api
    @alexbarghi-nv
    alexbarghi-nv committed Aug 11, 2022
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  5. more fixes and cleanup

    @alexbarghi-nv
    alexbarghi-nv committed Aug 11, 2022
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  6. move notebook to correct location

    @alexbarghi-nv
    alexbarghi-nv committed Aug 11, 2022
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  7. update notebook

    @alexbarghi-nv
    alexbarghi-nv committed Aug 11, 2022
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  8. remove cudf storage

    @alexbarghi-nv
    alexbarghi-nv committed Aug 11, 2022
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Commits on Aug 16, 2022

  1. unit tests for sg

    @alexbarghi-nv
    alexbarghi-nv committed Aug 16, 2022
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  2. remove garbage file

    @alexbarghi-nv
    alexbarghi-nv committed Aug 16, 2022
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  3. revert yaml change

    @alexbarghi-nv
    alexbarghi-nv committed Aug 16, 2022
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  4. revert egonet change

    @alexbarghi-nv
    alexbarghi-nv committed Aug 16, 2022
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  5. add experimental warnings to loaders

    @alexbarghi-nv
    alexbarghi-nv committed Aug 16, 2022
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Commits on Aug 17, 2022

  1. test fixes

    @alexbarghi-nv
    alexbarghi-nv committed Aug 17, 2022
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  2. fix style

    @alexbarghi-nv
    alexbarghi-nv committed Aug 17, 2022
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  3. add the sg sampling fix

    @alexbarghi-nv
    alexbarghi-nv committed Aug 17, 2022
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  4. rename functions

    @alexbarghi-nv
    alexbarghi-nv committed Aug 17, 2022
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  5. style fix

    @alexbarghi-nv
    alexbarghi-nv committed Aug 17, 2022
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  6. fixes for graph sage 

    remove data files
    @alexbarghi-nv
    alexbarghi-nv committed Aug 17, 2022
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Commits on Aug 24, 2022

  1. Drop __init__ and add __post_init__ to simplify constructor for CuGra… 

    …phEdgeAttr

Co-authored-by: Rick Ratzel <[email protected]>
    @alexbarghi-nv @rlratzel
    alexbarghi-nv and rlratzel authored Aug 24, 2022
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  2. Change assert statement to proper error message. 

    Co-authored-by: Rick Ratzel <[email protected]>
    @alexbarghi-nv @rlratzel
    alexbarghi-nv and rlratzel authored Aug 24, 2022
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  3. clean up notebook and disable tests

    @alexbarghi-nv
    alexbarghi-nv committed Aug 24, 2022
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  4. Merge branch 'cugraph-pyg-new-api' of https://github.com/alexbarghi-n… 

    …v/cugraph into cugraph-pyg-new-api
    @alexbarghi-nv
    alexbarghi-nv committed Aug 24, 2022
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  5. remove hardcoded type feature 

    Co-authored-by: Rick Ratzel <[email protected]>
    @alexbarghi-nv @rlratzel
    alexbarghi-nv and rlratzel authored Aug 24, 2022
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  6. make backend private

    @alexbarghi-nv
    alexbarghi-nv committed Aug 24, 2022
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  7. Merge branch 'cugraph-pyg-new-api' of https://github.com/alexbarghi-n… 

    …v/cugraph into cugraph-pyg-new-api
    @alexbarghi-nv
    alexbarghi-nv committed Aug 24, 2022
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  8. simplify uniform_neighbor_sample call 

    Co-authored-by: Rick Ratzel <[email protected]>
    @alexbarghi-nv @rlratzel
    alexbarghi-nv and rlratzel authored Aug 24, 2022
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  9. add additional comments for _get_edge_index

    @alexbarghi-nv
    alexbarghi-nv committed Aug 24, 2022
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  10. Merge branch 'cugraph-pyg-new-api' of https://github.com/alexbarghi-n… 

    …v/cugraph into cugraph-pyg-new-api
    @alexbarghi-nv
    alexbarghi-nv committed Aug 24, 2022
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  11. add edge type check for single edge optimized code

    @alexbarghi-nv
    alexbarghi-nv committed Aug 24, 2022
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  12. remove the fake groupby in favor of a future better solution

    @alexbarghi-nv
    alexbarghi-nv committed Aug 24, 2022
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  13. don't access the __dict__ 

    Co-authored-by: Rick Ratzel <[email protected]>
    @alexbarghi-nv @rlratzel
    alexbarghi-nv and rlratzel authored Aug 24, 2022
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  14. style fix

    @alexbarghi-nv
    alexbarghi-nv committed Aug 24, 2022
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  15. Merge branch 'cugraph-pyg-new-api' of https://github.com/alexbarghi-n… 

    …v/cugraph into cugraph-pyg-new-api
    @alexbarghi-nv
    alexbarghi-nv committed Aug 24, 2022
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Commits on Aug 25, 2022

  1. set to list

    @alexbarghi-nv
    alexbarghi-nv committed Aug 25, 2022
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  2. change to cupy.arange

    @alexbarghi-nv
    alexbarghi-nv committed Aug 25, 2022
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