rhub Solaris fails to compile RcppEigen package

[lukesonnet]

I'm having trouble checking a package that uses RcppEigen using the Solaris platform. I get the following message when it tries to install my package:

Installing package into ‘/export/home/XVshGHo/R’
(as ‘lib’ is unspecified)
* installing *source* package ‘estimatr’ ...
** libs
/opt/csw/bin/g++ -std=gnu++11 -I/opt/R/R-3.4.1-patched-gcc/lib/R/include -DNDEBUG  -I"/export/home/XVshGHo/R/Rcpp/include" -I"/export/home/XVshGHo/R/RcppEigen/include" -I/opt/csw/include -I/usr/local/include   -fPIC  -O2 -c RcppExports.cpp -o RcppExports.o
In file included from /opt/csw/include/c++/5.2.0/cmath:44:0,
                 from /export/home/XVshGHo/R/Rcpp/include/Rcpp/platform/compiler.h:100,
                 from /export/home/XVshGHo/R/Rcpp/include/Rcpp/r/headers.h:48,
                 from /export/home/XVshGHo/R/Rcpp/include/RcppCommon.h:38,
                 from /export/home/XVshGHo/R/RcppEigen/include/RcppEigenForward.h:26,
                 from /export/home/XVshGHo/R/RcppEigen/include/RcppEigen.h:25,
                 from RcppExports.cpp:4:
/usr/include/math.h:45:12: error: ‘std::float_t’ has not been declared
 using std::float_t;
            ^
/usr/include/math.h:46:12: error: ‘std::double_t’ has not been declared
 using std::double_t;
            ^
/usr/include/math.h:48:12: error: ‘std::fpclassify’ has not been declared
 using std::fpclassify;
            ^
/usr/include/math.h:49:12: error: ‘std::isfinite’ has not been declared
 using std::isfinite;
            ^
/usr/include/math.h:50:12: error: ‘std::isinf’ has not been declared
 using std::isinf;
            ^
/usr/include/math.h:51:12: error: ‘std::isnan’ has not been declared
 using std::isnan;
            ^
/usr/include/math.h:52:12: error: ‘std::isnormal’ has not been declared
 using std::isnormal;
            ^
/usr/include/math.h:53:12: error: ‘std::signbit’ has not been declared
 using std::signbit;
            ^
/usr/include/math.h:55:12: error: ‘std::isgreater’ has not been declared
 using std::isgreater;
            ^
/usr/include/math.h:56:12: error: ‘std::isgreaterequal’ has not been declared
 using std::isgreaterequal;
            ^
/usr/include/math.h:57:12: error: ‘std::isless’ has not been declared
 using std::isless;
            ^
/usr/include/math.h:58:12: error: ‘std::islessequal’ has not been declared
 using std::islessequal;
            ^
/usr/include/math.h:59:12: error: ‘std::islessgreater’ has not been declared
 using std::islessgreater;
            ^
/usr/include/math.h:60:12: error: ‘std::isunordered’ has not been declared
 using std::isunordered;
            ^
/usr/include/math.h:62:12: error: ‘std::acosh’ has not been declared
 using std::acosh;
            ^
/usr/include/math.h:63:12: error: ‘std::asinh’ has not been declared
 using std::asinh;
            ^
/usr/include/math.h:64:12: error: ‘std::atanh’ has not been declared
 using std::atanh;
            ^
/usr/include/math.h:65:12: error: ‘std::cbrt’ has not been declared
 using std::cbrt;
            ^
/usr/include/math.h:66:12: error: ‘std::copysign’ has not been declared
 using std::copysign;
            ^
/usr/include/math.h:67:12: error: ‘std::erf’ has not been declared
 using std::erf;
            ^
/usr/include/math.h:68:12: error: ‘std::erfc’ has not been declared
 using std::erfc;
            ^
/usr/include/math.h:69:12: error: ‘std::exp2’ has not been declared
 using std::exp2;
            ^
/usr/include/math.h:70:12: error: ‘std::expm1’ has not been declared
 using std::expm1;
            ^
/usr/include/math.h:71:12: error: ‘std::fdim’ has not been declared
 using std::fdim;
            ^
/usr/include/math.h:72:12: error: ‘std::fma’ has not been declared
 using std::fma;
            ^
/usr/include/math.h:73:12: error: ‘std::fmax’ has not been declared
 using std::fmax;
            ^
/usr/include/math.h:74:12: error: ‘std::fmin’ has not been declared
 using std::fmin;
            ^
/usr/include/math.h:75:12: error: ‘std::hypot’ has not been declared
 using std::hypot;
            ^
/usr/include/math.h:76:12: error: ‘std::ilogb’ has not been declared
 using std::ilogb;
            ^
/usr/include/math.h:77:12: error: ‘std::lgamma’ has not been declared
 using std::lgamma;
            ^
/usr/include/math.h:78:12: error: ‘std::llrint’ has not been declared
 using std::llrint;
            ^
/usr/include/math.h:79:12: error: ‘std::llround’ has not been declared
 using std::llround;
            ^
/usr/include/math.h:80:12: error: ‘std::log1p’ has not been declared
 using std::log1p;
            ^
/usr/include/math.h:81:12: error: ‘std::log2’ has not been declared
 using std::log2;
            ^
/usr/include/math.h:82:12: error: ‘std::logb’ has not been declared
 using std::logb;
            ^
/usr/include/math.h:83:12: error: ‘std::lrint’ has not been declared
 using std::lrint;
            ^
/usr/include/math.h:84:12: error: ‘std::lround’ has not been declared
 using std::lround;
            ^
/usr/include/math.h:85:12: error: ‘std::nan’ has not been declared
 using std::nan;
            ^
/usr/include/math.h:86:12: error: ‘std::nanf’ has not been declared
 using std::nanf;
            ^
/usr/include/math.h:87:12: error: ‘std::nanl’ has not been declared
 using std::nanl;
            ^
/usr/include/math.h:88:12: error: ‘std::nearbyint’ has not been declared
 using std::nearbyint;
            ^
/usr/include/math.h:89:12: error: ‘std::nextafter’ has not been declared
 using std::nextafter;
            ^
/usr/include/math.h:90:12: error: ‘std::nexttoward’ has not been declared
 using std::nexttoward;
            ^
/usr/include/math.h:91:12: error: ‘std::remainder’ has not been declared
 using std::remainder;
            ^
/usr/include/math.h:92:12: error: ‘std::remquo’ has not been declared
 using std::remquo;
            ^
/usr/include/math.h:93:12: error: ‘std::rint’ has not been declared
 using std::rint;
            ^
/usr/include/math.h:94:12: error: ‘std::round’ has not been declared
 using std::round;
            ^
/usr/include/math.h:95:12: error: ‘std::scalbln’ has not been declared
 using std::scalbln;
            ^
/usr/include/math.h:96:12: error: ‘std::scalbn’ has not been declared
 using std::scalbn;
            ^
/usr/include/math.h:97:12: error: ‘std::tgamma’ has not been declared
 using std::tgamma;
            ^
/usr/include/math.h:98:12: error: ‘std::trunc’ has not been declared
 using std::trunc;
            ^
gmake: *** [/opt/R/R-3.4.1-patched-gcc/lib/R/etc/Makeconf:168: RcppExports.o] Error 1
ERROR: compilation failed for package ‘estimatr’
* removing ‘/export/home/XVshGHo/R/estimatr’
Warning message:
In i.p(...) :
  installation of package ‘/export/home/XVshGHo/Rtemp/RtmpN0aWXP/remotes538e73213918/estimatr’ had non-zero exit status

I'm trying to build in Solaris as we had an Error in our CRAN check that we would like to replicate and then fix. Not sure if this problem is known on rhub re: RcppEigen.

I'm also not sure if there's a way for me to incorporate Ripley's config: https://www.stats.ox.ac.uk/pub/bdr/Rconfig/r-patched-solaris-x86

This could also be a problem with RcppEigen? I'm just not sure and any advice would be appreciated, thanks.

edit: as you can see, it passes fine on CRAN's solaris machine https://www.r-project.org/nosvn/R.check/r-patched-solaris-x86/estimatr-00check.html

[mooresm]

This is an issue for me as well. I'm trying to fix a compile error on Solaris, but don't have any Solaris machine available to test it on. The error message that I get is slightly different:

checking package dependencies
Packages required but not available: ‘Rcpp’ ‘RcppEigen’

[lukesonnet]

If you scroll up in the log, can you see where it failed to install RcppEigen?

[mooresm]

It looks like it is due to a disk space issue on the Solaris server (see below). The log is available here

193#> trying URL 'https://cran.r-hub.io/src/contrib/Rcpp_0.12.15.tar.gz'
194#> Content type 'application/x-gzip' length 3762481 bytes (3.6 MB)
195#> ==================================================
196#> downloaded 3.6 MB
197#> trying URL 'https://cran.r-hub.io/src/contrib/RcppEigen_0.3.3.4.0.tar.gz'
198#> Content type 'application/x-gzip' length 1631870 bytes (1.6 MB)
199#> ==================================================
200#> downloaded 1.6 MB

591#> ERROR: dependency ‘Rcpp’ is not available for package ‘plyr’
592#> * removing ‘/export/home/XHxxLM0/R/plyr’
593#> Warning in close.connection(out) :
594#> Problem closing connection: No space left on device

[jmgirard]

I am having a similar issue with solaris running out of space while installing package dependencies:
https://builder.r-hub.io/status/original/circumplex_0.1.1.9001.tar.gz-291dbf0389ac4c1fa027c8f5e912f064

[gaborcsardi]

Cleaned up, should be ok now.

[muschellij2]

Getting a similar error but for Windows: https://builder.r-hub.io/status/ANTsRCore_0.5.6.2.tar.gz-f3fcfdbe914d485d88462a5e41664db7#L254

[gchung05]

Getting a similar error but for Windows: https://builder.r-hub.io/status/ANTsRCore_0.5.6.2.tar.gz-f3fcfdbe914d485d88462a5e41664db7#L254

Like @muschellij2 , having an issue on Windows Server 2008 with "No space left on device". Originally posted on Issue #176

[gaborcsardi]

RcppEigen compiles just fine now.