Python package

[surface code] MagicStateFactory and GateCounts refactor #3585

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Run time

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Job	Run time
format	1m 11s
autogenerate-notebooks	1m 29s
mypy	2m 35s
notebooks	6m 37s
pylint	2m 24s
pytest	17m 1s
pytest-dev-tools	2m 24s
	33m 41s