Merge pull request #30 from lowe-lab-ucl/isort

isort configuration

.pre-commit-config.yaml

@@ -3,7 +3,6 @@ repos:
       rev: 5.10.1
       hooks:
           - id: isort
-            args: ["--profile", "black"]
     - repo: https://github.com/pre-commit/pre-commit-hooks
       rev: v4.1.0
       hooks:

napari_btrack/_tests/test_dock_widget.py

@@ -2,14 +2,16 @@
 from typing import Dict, Tuple
 from unittest.mock import patch
 
-import napari
 import numpy as np
 import numpy.typing as npt
 import pytest
+from magicgui.widgets import Container
+
+import napari
+
 from btrack import datasets
 from btrack.config import load_config
 from btrack.datasets import cell_config, particle_config
-from magicgui.widgets import Container
 
 from ..track import _update_widgets_from_config, _widgets_to_tracker_config, track
 

napari_btrack/track.py

@@ -1,10 +1,17 @@
-from dataclasses import dataclass, field
 from typing import Any, Dict, List, Tuple, Union
+from dataclasses import field, dataclass
 
-import btrack
-import napari
 import numpy as np
 import numpy.typing as npt
+from magicgui.application import use_app
+from magicgui.types import FileDialogMode
+from magicgui.widgets import Container, PushButton, Widget, create_widget
+from pydantic import BaseModel
+from PyQt5.QtWidgets import QScrollArea
+
+import napari
+
+import btrack
 from btrack import datasets
 from btrack.config import (
     HypothesisModel,
@@ -14,11 +21,6 @@
     save_config,
 )
 from btrack.utils import segmentation_to_objects
-from magicgui.application import use_app
-from magicgui.types import FileDialogMode
-from magicgui.widgets import Container, PushButton, Widget, create_widget
-from pydantic import BaseModel
-from PyQt5.QtWidgets import QScrollArea
 
 default_cell_config = load_config(datasets.cell_config())
 

pyproject.toml

@@ -0,0 +1,29 @@
+[tool.black]
+target-version = ['py38', 'py39', 'py310']
+skip-string-normalization = false
+line-length = 88
+exclude = '''
+(
+  /(
+      \.eggs
+    | \.git
+    | \.hg
+    | \.mypy_cache
+    | \.tox
+    | \.venv
+    | _build
+    | build
+    | dist
+    | examples
+  )/
+)
+'''
+
+[tool.isort]
+profile = "black"
+length_sort = "False"
+length_sort_sections = "stdlib"
+known_first_party = "btrack"
+known_napari = "napari"
+sections = ["STDLIB", "THIRDPARTY", "NAPARI", "FIRSTPARTY", "LOCALFOLDER"]
+skip_gitignore = "True"