Remove pre-defined github actions

Use your own

.github/workflows/test_bamread.yml

@@ -28,15 +28,24 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v3
-      - uses: isort/isort-action@v1
+      - name: Set up Python environment
+        uses: actions/setup-python@v4
+        with:
+          python-version: "3.11"
+      - run: pip install isort
+      - run: isort --check --diff .
 
   black:
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v3
-      - uses: psf/black@stable
+      - name: Set up Python environment
+        uses: actions/setup-python@v4
         with:
-          args: .
+          python-version: "3.11.0"
+          max-line-length: "120"
+      - run: pip install black
+      - run: black --check --diff .
 
   flake8:
     runs-on: ubuntu-latest
@@ -46,11 +55,10 @@ jobs:
         uses: actions/checkout@v3
       - name: Set up Python environment
         uses: actions/setup-python@v4
-        with:
-          python-version: "3.11"
-          max-line-length: "120"
+      - name: flake8 Lint install
+        run: pip install flake8
       - name: flake8 Lint
-        uses: py-actions/flake8@v2
+        run: flake8 --max-line-length=120 bamread
 
   mypy:
     runs-on: ubuntu-latest

README.md

@@ -44,3 +44,13 @@ Upload to pypi
 ```bash
 twine upload -r testpypi dist/*
 ```
+
+# Run github actions locally
+
+See [act](https://github.com/nektos/act)
+
+```bash
+act -l # list available jobs
+act -j <job> # run a job
+act pull_request # run jobs triggered upon pull_request
+```