Bump actions/download-artifact from 3 to 4.1.7 in /.github/workflows #48
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| name: Install, lint, and test bamread | |
| # Source: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python#using-multiple-python-versions | |
| on: [pull_request] | |
| jobs: | |
| install_and_test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| # You can use PyPy versions in python-version. | |
| # For example, pypy2.7 and pypy3.9 | |
| matrix: | |
| python-version: ["3.7", "3.8", "3.9", "3.10", "3.11"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Test | |
| run: | | |
| pip install . | |
| cd tests && python -c "import bamread; print(bamread.read_bam_full('control.bam'))" | |
| isort: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python environment | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.11" | |
| - run: pip install isort | |
| - run: isort --check --diff . | |
| black: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python environment | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.11.0" | |
| max-line-length: "120" | |
| - run: pip install black | |
| - run: black --check --diff . | |
| flake8: | |
| runs-on: ubuntu-latest | |
| name: Lint | |
| steps: | |
| - name: Check out source repository | |
| uses: actions/checkout@v3 | |
| - name: Set up Python environment | |
| uses: actions/setup-python@v4 | |
| - name: flake8 Lint install | |
| run: pip install flake8 | |
| - name: flake8 Lint | |
| run: flake8 --max-line-length=120 bamread | |
| mypy: | |
| runs-on: ubuntu-latest | |
| name: Mypy | |
| steps: | |
| - name: Check out source repository | |
| uses: actions/checkout@v3 | |
| - name: Set up Python environment | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.11" | |
| - name: Install mypy | |
| run: pip install mypy | |
| - name: mypy | |
| run: mypy --install-types --non-interactive bamread |