Update 'replace_needed' to reduce total calls to 'patchelf' #376
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## main #376 +/- ##
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Coverage 92.37% 92.37%
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This is a pretty good patch overall and a nice improvement in performance and size. My only gripe is that the new replace_needed_multiple forces all subclasses to implement this method, or the caller needs to know that they cannot call this on certain instances.
What do you think about replacing instead the replace_needed method? It could be a bit more awkward to call it when only once replacement needs to take place, but we could improve that with the following signature:
def replace_needed(self, file_name, *old_new_pairs):
But it might not even be necessary to optimise for the single replacement case, since we won't use that at all after this patch. Either way, I'd definitely prefer keeping a single method for this.
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Thanks! That makes sense. My first implementation started with overloading the method to accept either but I got a little lost in the typing and didn't want to pass two lists and need to verify same length, etc. I will make some changes based on your suggestions and re-request review. |
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Thanks again @lkollar for the review. I liked the API you proposed and tried to implement it that way. Please let me know what you think of the updated patch when you have a chance. |
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Any thoughts on the CI failures? These tests pass locally for me and I don't see any changes in my branch that should have affected this. |
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check the ci failure traceback's please |
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Sorry I'm a bit confused about the error - it seems maybe the I just pushed a change to try the suggestion from here: actions/checkout#335 (comment) |
If your manylinux images are cached (i.e. latest not pulled), the you probably have older images with a git version that did not have the security fix. I'll push a PR for this & merge ASAP. |
Thanks so much! This would have taken me a while to sort out. |
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@aganders3, you can rebase on main & drop 276df3f, tests should pass now. |
…t pairs (based on review). Rebased on main to incorporate CI fixes.
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Thanks again @mayeut - tests indeed pass now. The Travis CI step seems to have had an error but I don't see a log of it even attempting to run, so I think it's different from a test failure. |
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Can someone please re-trigger the errored Travis job? I'm happy to make any requested changes but would love to see this merged! |
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I relaunched the Travis job, and indeed it passed this time. |
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Thanks very much for this fix. Does anyone have an estimate for when this will make it into a release? |
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To resolve my question, this has now been included in the 5.2.0 release. |
This changes
auditwheel repairto use the multiple-occurrences invocation ofpatchelf --replace-needed(i.e.patchelf --replace-needed old_1.so new_1.so --replace-needed old_2.so new_2.so filename.so) instead of callingpatchelfmultiple times. I observedtwothree benefits to this:patchelfseems to increase the size of the resulting binary. Though in my instance the compressed size was comparable, the inflated size difference was significant (see below for a comparison). This is meaningful when wheels are distributed installed e.g. as part of a Docker image.patchelfalso seems to result in faster wheel repair.auditwheel repair --strip ...would produce a broken wheel that gave anELF load command address/offset not properly alignederror on import. With this change,--stripseems to work as expected.This may be more of a workaround for issues with
patchelf(see NixOS/patchelf#370), but I'm not familiar with the internal workings of that program.Thanks for considering this change! I welcome any feedback as this is my first time really digging into packaging. I would be very interested to see if this improvement holds up generally across many different packages.
Sample inflated wheel size comparison
(sorry for the very verbose output)
Proposed change
Note the total inflated size is reduced by ~5x in this example.
[root@2b2bee6ed3f3 wheelhouse]# unzip -l wheelhouse-new/antspyx-0.3.2+hri.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl Archive: wheelhouse-new/antspyx-0.3.2+hri.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl Length Date Time Name --------- ---------- ----- ---- 0 04-13-2022 15:57 antspyx.libs/ 0 04-13-2022 15:57 antspyx-0.3.2+hri.0.dist-info/ 0 04-13-2022 15:57 ants/ 526632 04-13-2022 15:57 antspyx.libs/libitktiff-5-676c3f9f.3.so.1 404096 04-13-2022 15:57 antspyx.libs/libitkgdcmopenjp2-5-21100300.3.so.1 35568 04-13-2022 15:57 antspyx.libs/libITKRegistrationMethodsv4-5-5768b011.3.so.1 148456 04-13-2022 15:57 antspyx.libs/libITKIOTransformMatlab-5-2e6a88da.3.so.1 113144 04-13-2022 15:57 antspyx.libs/libITKIOLSM-5-bd6bdcb3.3.so.1 584016 04-13-2022 15:57 antspyx.libs/libitksys-5-9387fd6e.3.so.1 706216 04-13-2022 15:57 antspyx.libs/libITKOptimizers-5-825fe76b.3.so.1 44304 04-13-2022 15:57 antspyx.libs/libITKPolynomials-5-7acf0399.3.so.1 499120 04-13-2022 15:57 antspyx.libs/libitkminc2-5-b55b2e59.3.so.1 141064 04-13-2022 15:57 antspyx.libs/libITKIOMeshBYU-5-af5ee9b7.3.so.1 2838160 04-13-2022 15:57 antspyx.libs/libitkgdcmDICT-5-602b02a3.3.so.1 39184 04-13-2022 15:57 antspyx.libs/libITKMesh-5-33e82eca.3.so.1 79512 04-13-2022 15:57 antspyx.libs/libITKIOCSV-5-5d35fb7f.3.so.1 196832 04-13-2022 15:57 antspyx.libs/libITKgiftiio-5-34e6384e.3.so.1 484544 04-13-2022 15:57 antspyx.libs/libITKSpatialObjects-5-e8152a73.3.so.1 1442880 04-13-2022 15:57 antspyx.libs/libitkvnl_algo-5-e6ce72e1.3.so.1 17216 04-13-2022 15:57 antspyx.libs/libITKSmoothing-5-141064e8.3.so.1 41456 04-13-2022 15:57 antspyx.libs/libitkNetlibSlatec-5-e614f7e3.3.so.1 313424 04-13-2022 15:57 antspyx.libs/libitkjpeg-5-3bbeee3a.3.so.1 464264 04-13-2022 15:57 antspyx.libs/libITKIOTransformBase-5-121f2389.3.so.1 21512 04-13-2022 15:57 antspyx.libs/libITKDenoising-5-00f91b7d.3.so.1 839880 04-13-2022 15:57 antspyx.libs/libITKIOMeshVTK-5-09a0899c.3.so.1 1260712 04-13-2022 15:57 antspyx.libs/libitkgdcmDSED-5-e6ec6a7b.3.so.1 4094472 04-13-2022 15:57 antspyx.libs/libITKFFT-5-ea8e03b8.3.so.1 25792 04-13-2022 15:57 antspyx.libs/libITKRegionGrowing-5-c45e7396.3.so.1 62784 04-13-2022 15:57 antspyx.libs/libITKWatersheds-5-29b97520.3.so.1 200944 04-13-2022 15:57 antspyx.libs/libITKIOXML-5-3a1e8b08.3.so.1 111224 04-13-2022 15:57 antspyx.libs/libITKIOMeshBase-5-6fec2de6.3.so.1 105768 04-13-2022 15:57 antspyx.libs/libITKKLMRegionGrowing-5-e9d012cc.3.so.1 121408 04-13-2022 15:57 antspyx.libs/libITKIOGIPL-5-b7f79d5a.3.so.1 5013840 04-13-2022 15:57 antspyx.libs/libitkhdf5-shared-5-cfd06ae4.3.so.1 21656 04-13-2022 15:57 antspyx.libs/libitkvcl-5-bb700565.3.so.1 340272 04-13-2022 15:57 antspyx.libs/libITKNrrdIO-5-ca003690.3.so.1 25992 04-13-2022 15:57 antspyx.libs/libITKPDEDeformableRegistration-5-551d8f54.3.so.1 25792 04-13-2022 15:57 antspyx.libs/libITKMathematicalMorphology-5-7a3f72c7.3.so.1 207552 04-13-2022 15:57 antspyx.libs/libITKIOMeshGifti-5-69409b91.3.so.1 29888 04-13-2022 15:57 antspyx.libs/libITKQuadEdgeMeshFiltering-5-67af6c32.3.so.1 25120 04-13-2022 15:57 antspyx.libs/libITKVNLInstantiation-5-9c5f799d.3.so.1 223048 04-13-2022 15:57 antspyx.libs/libITKIONIFTI-5-4f0ac868.3.so.1 246520 04-13-2022 15:57 antspyx.libs/libitkgdcmjpeg8-5-c066f1af.3.so.1 177248 04-13-2022 15:57 antspyx.libs/libITKIOIPL-5-b8ad9712.3.so.1 113032 04-13-2022 15:57 antspyx.libs/libITKIOSiemens-5-228a2bc0.3.so.1 201832 04-13-2022 15:57 antspyx.libs/libITKIOMeshFreeSurfer-5-4e372563.3.so.1 109576 04-13-2022 15:57 antspyx.libs/libitkgdcmCommon-5-49c20d24.3.so.1 238448 04-13-2022 15:57 antspyx.libs/libitkgdcmjpeg12-5-4d714595.3.so.1 977144 04-13-2022 15:57 antspyx.libs/libITKMetaIO-5-8bf156dd.3.so.1 237648 04-13-2022 15:57 antspyx.libs/libitkopenjpeg-5-1a34806f.3.so.1 130064 04-13-2022 15:57 antspyx.libs/libITKIOJPEG-5-d06d0bfe.3.so.1 184336 04-13-2022 15:57 antspyx.libs/libITKIOJPEG2000-5-42f282e4.3.so.1 25848 04-13-2022 15:57 antspyx.libs/libITKConvolution-5-091f396c.3.so.1 178808 04-13-2022 15:57 antspyx.libs/libITKIOGE-5-6163aea1.3.so.1 35472 04-13-2022 15:57 antspyx.libs/libITKQuadEdgeMesh-5-2c5b682d.3.so.1 129808 04-13-2022 15:57 antspyx.libs/libITKIOBMP-5-9aaf95d2.3.so.1 29128 04-13-2022 15:57 antspyx.libs/libITKznz-5-488075b2.3.so.1 396384 04-13-2022 15:57 antspyx.libs/libITKIOHDF5-5-daaa54a0.3.so.1 219816 04-13-2022 15:57 antspyx.libs/libITKIOMeta-5-7d3e013b.3.so.1 121928 04-13-2022 15:57 antspyx.libs/libITKIOBioRad-5-d193602d.3.so.1 177016 04-13-2022 15:57 antspyx.libs/libITKIONRRD-5-a59385d5.3.so.1 187360 04-13-2022 15:57 antspyx.libs/libpng15-ce838cd1.so.15.13.0 134448 04-13-2022 15:57 antspyx.libs/libITKIOStimulate-5-78e40c98.3.so.1 224824 04-13-2022 15:57 antspyx.libs/libITKIOBruker-5-f2fcb35b.3.so.1 325088 04-13-2022 15:57 antspyx.libs/libITKIOGDCM-5-989e05ac.3.so.1 195536 04-13-2022 15:57 antspyx.libs/libITKIOMINC-5-c6454c1a.3.so.1 25688 04-13-2022 15:57 antspyx.libs/libITKImageFeature-5-7b832af5.3.so.1 2261536 04-13-2022 15:57 antspyx.libs/libITKCommon-5-77580bde.3.so.1 624232 04-13-2022 15:57 antspyx.libs/libitkgdcmcharls-5-473d5561.3.so.1 154120 04-13-2022 15:57 antspyx.libs/libitkzlib-5-8d51c88c.3.so.1.2.11.zlib-ng 115752 04-13-2022 15:57 antspyx.libs/libitkgdcmIOD-5-870e3d40.3.so.1 35352 04-13-2022 15:57 antspyx.libs/libITKBiasCorrection-5-47fce04b.3.so.1 197008 04-13-2022 15:57 antspyx.libs/libITKIOTransformHDF5-5-7be9b192.3.so.1 85864 04-13-2022 15:57 antspyx.libs/libitkdouble-conversion-5-61107de3.3.so.1 7251088 04-13-2022 15:57 antspyx.libs/libITKTestKernel-5-748bf3ac.3.so.1 225248 04-13-2022 15:57 antspyx.libs/libITKEXPAT-5-1151843b.3.so.1 35168 04-13-2022 15:57 antspyx.libs/libITKTransform-5-dd17e93c.3.so.1 9936768 04-13-2022 15:57 antspyx.libs/libITKTransformFactory-5-4de6fc0d.3.so.1 311392 04-13-2022 15:57 antspyx.libs/libITKOptimizersv4-5-db98c968.3.so.1 146824 04-13-2022 15:57 antspyx.libs/libitkMGHIO-5-8f2e6e10.3.so.1 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antspyx.libs/libITKReview-5-1d7e8309.3.so.1 1161040 04-13-2022 15:57 antspyx.libs/libitkv3p_netlib-5-4b54c378.3.so.1 17256 04-13-2022 15:57 antspyx.libs/libITKDiffusionTensorImage-5-a34c123e.3.so.1 216752 04-13-2022 15:57 antspyx.libs/libITKStatistics-5-a16b04cd.3.so.1 170608 04-13-2022 15:57 antspyx.libs/libITKIOMeshOBJ-5-55a0b54c.3.so.1 238448 04-13-2022 15:57 antspyx.libs/libitkgdcmjpeg16-5-2b4df9be.3.so.1 188952 04-13-2022 15:57 antspyx.libs/libITKIOVTK-5-c91247dc.3.so.1 138280 04-13-2022 15:57 antspyx.libs/libITKIOPNG-5-c368b6c6.3.so.1 856720 04-13-2022 15:57 antspyx.libs/libitkhdf5_cpp-shared-5-25b86089.3.so.1 30152 04-13-2022 15:57 antspyx.libs/libITKLabelMap-5-8820f3fa.3.so.1 186840 04-13-2022 15:57 antspyx.libs/libITKIOMeshOFF-5-3fb02870.3.so.1 90056 04-13-2022 15:57 antspyx.libs/libITKVTK-5-8f97fa3a.3.so.1 236840 04-13-2022 15:57 antspyx.libs/libITKIOTIFF-5-d178402b.3.so.1 2791864 04-13-2022 15:57 antspyx.libs/libitkgdcmMSFF-5-f7a8c9e7.3.so.1 331792 04-13-2022 15:57 antspyx.libs/libITKIOImageBase-5-105668d8.3.so.1 11357 04-13-2022 15:57 antspyx-0.3.2+hri.0.dist-info/LICENSE 5 04-13-2022 15:57 antspyx-0.3.2+hri.0.dist-info/top_level.txt 5836 04-13-2022 15:57 antspyx-0.3.2+hri.0.dist-info/METADATA 26142 04-13-2022 15:57 antspyx-0.3.2+hri.0.dist-info/RECORD 150 04-13-2022 15:57 antspyx-0.3.2+hri.0.dist-info/WHEEL 0 04-13-2022 15:57 ants/learn/ 0 04-13-2022 15:57 ants/utils/ 0 04-13-2022 15:57 ants/lib/ 0 04-13-2022 15:57 ants/contrib/ 0 04-13-2022 15:57 ants/segmentation/ 0 04-13-2022 15:57 ants/viz/ 0 04-13-2022 15:57 ants/core/ 0 04-13-2022 15:57 ants/registration/ 28 04-13-2022 15:57 ants/version.py 221 04-13-2022 15:57 ants/__init__.py 29 04-13-2022 15:57 ants/learn/__init__.py 13566 04-13-2022 15:57 ants/learn/decomposition.py 1007 04-13-2022 15:57 ants/utils/hausdorff_distance.py 2490 04-13-2022 15:57 ants/utils/label_image_centroids.py 3400 04-13-2022 15:57 ants/utils/ndimage_to_list.py 2321 04-13-2022 15:57 ants/utils/denoise_image.py 4863 04-13-2022 15:57 ants/utils/impute.py 2480 04-13-2022 15:57 ants/utils/smooth_image.py 4161 04-13-2022 15:57 ants/utils/morphology.py 2435 04-13-2022 15:57 ants/utils/ants_integrate_velocity_field.py 1624 04-13-2022 15:57 ants/utils/histogram_match_image.py 6473 04-13-2022 15:57 ants/utils/get_neighborhood.py 1397 04-13-2022 15:57 ants/utils/image_to_cluster_images.py 1023 04-13-2022 15:57 ants/utils/label_stats.py 8235 04-13-2022 15:57 ants/utils/fit_bspline_object_to_scattered_data.py 1162 04-13-2022 15:57 ants/utils/label_overlap_measures.py 7974 04-13-2022 15:57 ants/utils/invariant_image_similarity.py 2517 04-13-2022 15:57 ants/utils/channels.py 1500 04-13-2022 15:57 ants/utils/get_centroids.py 1903 04-13-2022 15:57 ants/utils/labels_to_matrix.py 1572 04-13-2022 15:57 ants/utils/convert_nibabel.py 1248 04-13-2022 15:57 ants/utils/__init__.py 5923 04-13-2022 15:57 ants/utils/iMath.py 8429 04-13-2022 15:57 ants/utils/fit_bspline_displacement_field.py 1436 04-13-2022 15:57 ants/utils/label_clusters.py 3976 04-13-2022 15:57 ants/utils/multi_label_morphology.py 1875 04-13-2022 15:57 ants/utils/weingarten_image_curvature.py 819 04-13-2022 15:57 ants/utils/slice_image.py 2609 04-13-2022 15:57 ants/utils/get_mask.py 1536 04-13-2022 15:57 ants/utils/mask_image.py 13623 04-13-2022 15:57 ants/utils/quantile.py 4392 04-13-2022 15:57 ants/utils/crop_image.py 9863 04-13-2022 15:57 ants/utils/bias_correction.py 2969 04-13-2022 15:57 ants/utils/get_ants_data.py 2364 04-13-2022 15:57 ants/utils/process_args.py 4171 04-13-2022 15:57 ants/utils/scalar_rgb_vector.py 2500 04-13-2022 15:57 ants/utils/pad_image.py 1609 04-13-2022 15:57 ants/utils/threshold_image.py 3368 04-13-2022 15:57 ants/utils/simulate_displacement_field.py 1716 04-13-2022 15:57 ants/utils/image_similarity.py 1377 04-13-2022 15:57 ants/utils/mni2tal.py 3211 04-13-2022 15:57 ants/utils/add_noise_to_image.py 1603640 04-13-2022 15:57 ants/lib/antsImageAugment.cpython-37m-x86_64-linux-gnu.so 517672 04-13-2022 15:57 ants/lib/reflectionMatrix.cpython-37m-x86_64-linux-gnu.so 150192 04-13-2022 15:57 ants/lib/antsImageHeaderInfo.cpython-37m-x86_64-linux-gnu.so 1742704 04-13-2022 15:57 ants/lib/antsJointFusion.cpython-37m-x86_64-linux-gnu.so 1323576 04-13-2022 15:57 ants/lib/antsImage.cpython-37m-x86_64-linux-gnu.so 2365376 04-13-2022 15:57 ants/lib/antsAffineInitializer.cpython-37m-x86_64-linux-gnu.so 1548600 04-13-2022 15:57 ants/lib/simulateDisplacementField.cpython-37m-x86_64-linux-gnu.so 637392 04-13-2022 15:57 ants/lib/fitBsplineDisplacementFieldToScatteredData.cpython-37m-x86_64-linux-gnu.so 1398464 04-13-2022 15:57 ants/lib/antsImageMutualInformation.cpython-37m-x86_64-linux-gnu.so 3524648 04-13-2022 15:57 ants/lib/KellyKapowski.cpython-37m-x86_64-linux-gnu.so 6468352 04-13-2022 15:57 ants/lib/iMath.cpython-37m-x86_64-linux-gnu.so 54190016 04-13-2022 15:57 ants/lib/antsRegistration.cpython-37m-x86_64-linux-gnu.so 238200 04-13-2022 15:57 ants/lib/fsl2antstransform.cpython-37m-x86_64-linux-gnu.so 440272 04-13-2022 15:57 ants/lib/labelOverlapMeasures.cpython-37m-x86_64-linux-gnu.so 1490944 04-13-2022 15:57 ants/lib/fitBsplineObjectToScatteredData.cpython-37m-x86_64-linux-gnu.so 203048 04-13-2022 15:57 ants/lib/reorientImage.cpython-37m-x86_64-linux-gnu.so 914624 04-13-2022 15:57 ants/lib/hausdorffDistance.cpython-37m-x86_64-linux-gnu.so 174840 04-13-2022 15:57 ants/lib/antsImageUtils.cpython-37m-x86_64-linux-gnu.so 374832 04-13-2022 15:57 ants/lib/labelStats.cpython-37m-x86_64-linux-gnu.so 4803664 04-13-2022 15:57 ants/lib/antsTransform.cpython-37m-x86_64-linux-gnu.so 448536 04-13-2022 15:57 ants/lib/padImage.cpython-37m-x86_64-linux-gnu.so 341216 04-13-2022 15:57 ants/lib/sliceImage.cpython-37m-x86_64-linux-gnu.so 669448 04-13-2022 15:57 ants/lib/antiAlias.cpython-37m-x86_64-linux-gnu.so 479920 04-13-2022 15:57 ants/lib/antsImageClone.cpython-37m-x86_64-linux-gnu.so 2349 04-13-2022 15:57 ants/lib/__init__.py 399432 04-13-2022 15:57 ants/lib/addNoiseToImage.cpython-37m-x86_64-linux-gnu.so 586320 04-13-2022 15:57 ants/lib/integrateVelocityField.cpython-37m-x86_64-linux-gnu.so 779512 04-13-2022 15:57 ants/lib/rgbToVector.cpython-37m-x86_64-linux-gnu.so 1478880 04-13-2022 15:57 ants/lib/ThresholdImage.cpython-37m-x86_64-linux-gnu.so 1235360 04-13-2022 15:57 ants/lib/sccaner.cpython-37m-x86_64-linux-gnu.so 711328 04-13-2022 15:57 ants/lib/getNeighborhoodMatrix.cpython-37m-x86_64-linux-gnu.so 2042360 04-13-2022 15:57 ants/lib/antsImageToImageMetric.cpython-37m-x86_64-linux-gnu.so 1957296 04-13-2022 15:57 ants/lib/DenoiseImage.cpython-37m-x86_64-linux-gnu.so 4876488 04-13-2022 15:57 ants/lib/Atropos.cpython-37m-x86_64-linux-gnu.so 931024 04-13-2022 15:57 ants/lib/CreateJacobianDeterminantImage.cpython-37m-x86_64-linux-gnu.so 825872 04-13-2022 15:57 ants/lib/TileImages.cpython-37m-x86_64-linux-gnu.so 601504 04-13-2022 15:57 ants/lib/cropImage.cpython-37m-x86_64-linux-gnu.so 447200 04-13-2022 15:57 ants/lib/mergeChannels.cpython-37m-x86_64-linux-gnu.so 6307168 04-13-2022 15:57 ants/lib/ResampleImage.cpython-37m-x86_64-linux-gnu.so 592424 04-13-2022 15:57 ants/lib/SmoothImage.cpython-37m-x86_64-linux-gnu.so 523680 04-13-2022 15:57 ants/lib/weingartenImageCurvature.cpython-37m-x86_64-linux-gnu.so 11610104 04-13-2022 15:57 ants/lib/antsApplyTransforms.cpython-37m-x86_64-linux-gnu.so 641416 04-13-2022 15:57 ants/lib/fitBsplineDisplacementField.cpython-37m-x86_64-linux-gnu.so 1490920 04-13-2022 15:57 ants/lib/LabelGeometryMeasures.cpython-37m-x86_64-linux-gnu.so 2769392 04-13-2022 15:57 ants/lib/antsApplyTransformsToPoints.cpython-37m-x86_64-linux-gnu.so 1793616 04-13-2022 15:57 ants/lib/readImage.cpython-37m-x86_64-linux-gnu.so 2958296 04-13-2022 15:57 ants/lib/N3BiasFieldCorrection.cpython-37m-x86_64-linux-gnu.so 662752 04-13-2022 15:57 ants/lib/readTransform.cpython-37m-x86_64-linux-gnu.so 312560 04-13-2022 15:57 ants/lib/reorientImage2.cpython-37m-x86_64-linux-gnu.so 465896 04-13-2022 15:57 ants/lib/histogramMatchImage.cpython-37m-x86_64-linux-gnu.so 2183664 04-13-2022 15:57 ants/lib/N4BiasFieldCorrection.cpython-37m-x86_64-linux-gnu.so 1209112 04-13-2022 15:57 ants/lib/LabelClustersUniquely.cpython-37m-x86_64-linux-gnu.so 1250584 04-13-2022 15:57 ants/lib/CreateTiledMosaic.cpython-37m-x86_64-linux-gnu.so 737952 04-13-2022 15:57 ants/lib/ConvertScalarImageToRGB.cpython-37m-x86_64-linux-gnu.so 0 04-13-2022 15:57 ants/contrib/sampling/ 0 04-13-2022 15:57 ants/contrib/bids/ 0 04-13-2022 15:57 ants/contrib/sklearn_interface/ 59 04-13-2022 15:57 ants/contrib/__init__.py 21671 04-13-2022 15:57 ants/contrib/sampling/affine2d.py 24051 04-13-2022 15:57 ants/contrib/sampling/affine3d.py 24297 04-13-2022 15:57 ants/contrib/sampling/transforms.py 75 04-13-2022 15:57 ants/contrib/sampling/__init__.py 22 04-13-2022 15:57 ants/contrib/bids/__init__.py 3032 04-13-2022 15:57 ants/contrib/bids/cohort.py 37 04-13-2022 15:57 ants/contrib/sklearn_interface/__init__.py 5900 04-13-2022 15:57 ants/contrib/sklearn_interface/sklearn_registration.py 2134 04-13-2022 15:57 ants/segmentation/prior_based_segmentation.py 968 04-13-2022 15:57 ants/segmentation/otsu.py 1955 04-13-2022 15:57 ants/segmentation/kelly_kapowski.py 1421 04-13-2022 15:57 ants/segmentation/label_geometry_measures.py 401 04-13-2022 15:57 ants/segmentation/__init__.py 1101 04-13-2022 15:57 ants/segmentation/anti_alias.py 6278 04-13-2022 15:57 ants/segmentation/functional_lung_segmentation.py 1247 04-13-2022 15:57 ants/segmentation/kmeans.py 18925 04-13-2022 15:57 ants/segmentation/joint_label_fusion.py 5106 04-13-2022 15:57 ants/segmentation/fuzzy_spatial_cmeans_segmentation.py 5204 04-13-2022 15:57 ants/segmentation/atropos.py 4152 04-13-2022 15:57 ants/viz/create_tiled_mosaic.py 26238 04-13-2022 15:57 ants/viz/volume.py 139 04-13-2022 15:57 ants/viz/__init__.py 31219 04-13-2022 15:57 ants/viz/surface.py 87442 04-13-2022 15:57 ants/viz/plot.py 5503 04-13-2022 15:57 ants/viz/render_surface_function.py 3155 04-13-2022 15:57 ants/core/ants_metric_io.py 33118 04-13-2022 15:57 ants/core/ants_image.py 17883 04-13-2022 15:57 ants/core/ants_image_io.py 177 04-13-2022 15:57 ants/core/__init__.py 14318 04-13-2022 15:57 ants/core/ants_transform.py 9158 04-13-2022 15:57 ants/core/ants_transform_io.py 4438 04-13-2022 15:57 ants/core/ants_metric.py 3143 04-13-2022 15:57 ants/registration/build_template.py 1376 04-13-2022 15:57 ants/registration/symmetrize_image.py 452 04-13-2022 15:57 ants/registration/__init__.py 3991 04-13-2022 15:57 ants/registration/create_warped_grid.py 5955 04-13-2022 15:57 ants/registration/resample_image.py 1024 04-13-2022 15:57 ants/registration/metrics.py 1533 04-13-2022 15:57 ants/registration/reflect_image.py 3033 04-13-2022 15:57 ants/registration/reorient_image.py 63183 04-13-2022 15:57 ants/registration/interface.py 1750 04-13-2022 15:57 ants/registration/make_points_image.py 1708 04-13-2022 15:57 ants/registration/create_jacobian_determinant_image.py 1359 04-13-2022 15:57 ants/registration/fsl2antstransform.py 2581 04-13-2022 15:57 ants/registration/landmark_transforms.py 12151 04-13-2022 15:57 ants/registration/apply_transforms.py 2116 04-13-2022 15:57 ants/registration/affine_initializer.py --------- ------- 212831973 270 filesCurrent version of
auditwheel[root@2b2bee6ed3f3 wheelhouse]# unzip -l wheelhouse-old/antspyx-0.3.2+hri.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl Archive: wheelhouse-old/antspyx-0.3.2+hri.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl Length Date Time Name --------- ---------- ----- ---- 0 04-13-2022 15:59 antspyx.libs/ 0 04-13-2022 15:59 antspyx-0.3.2+hri.0.dist-info/ 0 04-13-2022 15:59 ants/ 534824 04-13-2022 15:59 antspyx.libs/libitktiff-5-676c3f9f.3.so.1 404096 04-13-2022 15:59 antspyx.libs/libitkgdcmopenjp2-5-21100300.3.so.1 101104 04-13-2022 15:59 antspyx.libs/libITKRegistrationMethodsv4-5-5768b011.3.so.1 295912 04-13-2022 15:59 antspyx.libs/libITKIOTransformMatlab-5-2e6a88da.3.so.1 248312 04-13-2022 15:59 antspyx.libs/libITKIOLSM-5-bd6bdcb3.3.so.1 584016 04-13-2022 15:59 antspyx.libs/libitksys-5-9387fd6e.3.so.1 1132200 04-13-2022 15:59 antspyx.libs/libITKOptimizers-5-825fe76b.3.so.1 72976 04-13-2022 15:59 antspyx.libs/libITKPolynomials-5-7acf0399.3.so.1 531888 04-13-2022 15:59 antspyx.libs/libitkminc2-5-b55b2e59.3.so.1 276232 04-13-2022 15:59 antspyx.libs/libITKIOMeshBYU-5-af5ee9b7.3.so.1 2846352 04-13-2022 15:59 antspyx.libs/libitkgdcmDICT-5-602b02a3.3.so.1 67856 04-13-2022 15:59 antspyx.libs/libITKMesh-5-33e82eca.3.so.1 140952 04-13-2022 15:59 antspyx.libs/libITKIOCSV-5-5d35fb7f.3.so.1 221408 04-13-2022 15:59 antspyx.libs/libITKgiftiio-5-34e6384e.3.so.1 812224 04-13-2022 15:59 antspyx.libs/libITKSpatialObjects-5-e8152a73.3.so.1 1680448 04-13-2022 15:59 antspyx.libs/libitkvnl_algo-5-e6ce72e1.3.so.1 17216 04-13-2022 15:59 antspyx.libs/libITKSmoothing-5-141064e8.3.so.1 41456 04-13-2022 15:59 antspyx.libs/libitkNetlibSlatec-5-e614f7e3.3.so.1 313424 04-13-2022 15:59 antspyx.libs/libitkjpeg-5-3bbeee3a.3.so.1 759176 04-13-2022 15:59 antspyx.libs/libITKIOTransformBase-5-121f2389.3.so.1 21512 04-13-2022 15:59 antspyx.libs/libITKDenoising-5-00f91b7d.3.so.1 1208520 04-13-2022 15:59 antspyx.libs/libITKIOMeshVTK-5-09a0899c.3.so.1 1322152 04-13-2022 15:59 antspyx.libs/libitkgdcmDSED-5-e6ec6a7b.3.so.1 6527496 04-13-2022 15:59 antspyx.libs/libITKFFT-5-ea8e03b8.3.so.1 70848 04-13-2022 15:59 antspyx.libs/libITKRegionGrowing-5-c45e7396.3.so.1 169280 04-13-2022 15:59 antspyx.libs/libITKWatersheds-5-29b97520.3.so.1 327920 04-13-2022 15:59 antspyx.libs/libITKIOXML-5-3a1e8b08.3.so.1 234104 04-13-2022 15:59 antspyx.libs/libITKIOMeshBase-5-6fec2de6.3.so.1 154920 04-13-2022 15:59 antspyx.libs/libITKKLMRegionGrowing-5-e9d012cc.3.so.1 219712 04-13-2022 15:59 antspyx.libs/libITKIOGIPL-5-b7f79d5a.3.so.1 5013840 04-13-2022 15:59 antspyx.libs/libitkhdf5-shared-5-cfd06ae4.3.so.1 21656 04-13-2022 15:59 antspyx.libs/libitkvcl-5-bb700565.3.so.1 340272 04-13-2022 15:59 antspyx.libs/libITKNrrdIO-5-ca003690.3.so.1 83336 04-13-2022 15:59 antspyx.libs/libITKPDEDeformableRegistration-5-551d8f54.3.so.1 70848 04-13-2022 15:59 antspyx.libs/libITKMathematicalMorphology-5-7a3f72c7.3.so.1 469696 04-13-2022 15:59 antspyx.libs/libITKIOMeshGifti-5-69409b91.3.so.1 62656 04-13-2022 15:59 antspyx.libs/libITKQuadEdgeMeshFiltering-5-67af6c32.3.so.1 37408 04-13-2022 15:59 antspyx.libs/libITKVNLInstantiation-5-9c5f799d.3.so.1 403272 04-13-2022 15:59 antspyx.libs/libITKIONIFTI-5-4f0ac868.3.so.1 246520 04-13-2022 15:59 antspyx.libs/libitkgdcmjpeg8-5-c066f1af.3.so.1 291936 04-13-2022 15:59 antspyx.libs/libITKIOIPL-5-b8ad9712.3.so.1 211336 04-13-2022 15:59 antspyx.libs/libITKIOSiemens-5-228a2bc0.3.so.1 382056 04-13-2022 15:59 antspyx.libs/libITKIOMeshFreeSurfer-5-4e372563.3.so.1 109576 04-13-2022 15:59 antspyx.libs/libitkgdcmCommon-5-49c20d24.3.so.1 238448 04-13-2022 15:59 antspyx.libs/libitkgdcmjpeg12-5-4d714595.3.so.1 977144 04-13-2022 15:59 antspyx.libs/libITKMetaIO-5-8bf156dd.3.so.1 237648 04-13-2022 15:59 antspyx.libs/libitkopenjpeg-5-1a34806f.3.so.1 228368 04-13-2022 15:59 antspyx.libs/libITKIOJPEG-5-d06d0bfe.3.so.1 282640 04-13-2022 15:59 antspyx.libs/libITKIOJPEG2000-5-42f282e4.3.so.1 75000 04-13-2022 15:59 antspyx.libs/libITKConvolution-5-091f396c.3.so.1 309880 04-13-2022 15:59 antspyx.libs/libITKIOGE-5-6163aea1.3.so.1 68240 04-13-2022 15:59 antspyx.libs/libITKQuadEdgeMesh-5-2c5b682d.3.so.1 215824 04-13-2022 15:59 antspyx.libs/libITKIOBMP-5-9aaf95d2.3.so.1 29128 04-13-2022 15:59 antspyx.libs/libITKznz-5-488075b2.3.so.1 691296 04-13-2022 15:59 antspyx.libs/libITKIOHDF5-5-daaa54a0.3.so.1 404136 04-13-2022 15:59 antspyx.libs/libITKIOMeta-5-7d3e013b.3.so.1 207944 04-13-2022 15:59 antspyx.libs/libITKIOBioRad-5-d193602d.3.so.1 324472 04-13-2022 15:59 antspyx.libs/libITKIONRRD-5-a59385d5.3.so.1 187360 04-13-2022 15:59 antspyx.libs/libpng15-ce838cd1.so.15.13.0 220464 04-13-2022 15:59 antspyx.libs/libITKIOStimulate-5-78e40c98.3.so.1 339512 04-13-2022 15:59 antspyx.libs/libITKIOBruker-5-f2fcb35b.3.so.1 669152 04-13-2022 15:59 antspyx.libs/libITKIOGDCM-5-989e05ac.3.so.1 375760 04-13-2022 15:59 antspyx.libs/libITKIOMINC-5-c6454c1a.3.so.1 62552 04-13-2022 15:59 antspyx.libs/libITKImageFeature-5-7b832af5.3.so.1 3514912 04-13-2022 15:59 antspyx.libs/libITKCommon-5-77580bde.3.so.1 624232 04-13-2022 15:59 antspyx.libs/libitkgdcmcharls-5-473d5561.3.so.1 154120 04-13-2022 15:59 antspyx.libs/libitkzlib-5-8d51c88c.3.so.1.2.11.zlib-ng 132136 04-13-2022 15:59 antspyx.libs/libitkgdcmIOD-5-870e3d40.3.so.1 80408 04-13-2022 15:59 antspyx.libs/libITKBiasCorrection-5-47fce04b.3.so.1 422288 04-13-2022 15:59 antspyx.libs/libITKIOTransformHDF5-5-7be9b192.3.so.1 85864 04-13-2022 15:59 antspyx.libs/libitkdouble-conversion-5-61107de3.3.so.1 26420368 04-13-2022 15:59 antspyx.libs/libITKTestKernel-5-748bf3ac.3.so.1 225248 04-13-2022 15:59 antspyx.libs/libITKEXPAT-5-1151843b.3.so.1 59744 04-13-2022 15:59 antspyx.libs/libITKTransform-5-dd17e93c.3.so.1 16244608 04-13-2022 15:59 antspyx.libs/libITKTransformFactory-5-4de6fc0d.3.so.1 565344 04-13-2022 15:59 antspyx.libs/libITKOptimizersv4-5-db98c968.3.so.1 245128 04-13-2022 15:59 antspyx.libs/libitkMGHIO-5-8f2e6e10.3.so.1 17373256 04-13-2022 15:59 antspyx.libs/libitkvnl-5-e8086a45.3.so.1 297400 04-13-2022 15:59 antspyx.libs/libITKIOMRC-5-06d7de70.3.so.1 70864 04-13-2022 15:59 antspyx.libs/libitkAdaptiveDenoising-5-294cf63d.3.so.1 83320 04-13-2022 15:59 antspyx.libs/libITKDeformableMesh-5-8ad25a88.3.so.1 70856 04-13-2022 15:59 antspyx.libs/libITKMarkovRandomFieldsClassifiers-5-cc3df7c8.3.so.1 184904 04-13-2022 15:59 antspyx.libs/libITKPath-5-5fccea1d.3.so.1 21504 04-13-2022 15:59 antspyx.libs/libITKFastMarching-5-fd67f682.3.so.1 174872 04-13-2022 15:59 antspyx.libs/libITKniftiio-5-a1167cd6.3.so.1 21264 04-13-2022 15:59 antspyx.libs/libitkgdcmuuid-5-117fa7ed.3.so.1 334072 04-13-2022 15:59 antspyx.libs/libITKIOTransformInsightLegacy-5-a76ca6b1.3.so.1 33488 04-13-2022 15:59 antspyx.libs/libitklbfgs-5-3edcb43b.3.so.1 17216 04-13-2022 15:59 antspyx.libs/libITKColormap-5-f97d9f44.3.so.1 828128 04-13-2022 15:59 antspyx.libs/libITKIOSpatialObjects-5-4ceb105d.3.so.1 1266800 04-13-2022 15:59 antspyx.libs/libITKReview-5-1d7e8309.3.so.1 1161040 04-13-2022 15:59 antspyx.libs/libitkv3p_netlib-5-4b54c378.3.so.1 17256 04-13-2022 15:59 antspyx.libs/libITKDiffusionTensorImage-5-a34c123e.3.so.1 331440 04-13-2022 15:59 antspyx.libs/libITKStatistics-5-a16b04cd.3.so.1 305776 04-13-2022 15:59 antspyx.libs/libITKIOMeshOBJ-5-55a0b54c.3.so.1 238448 04-13-2022 15:59 antspyx.libs/libitkgdcmjpeg16-5-2b4df9be.3.so.1 303640 04-13-2022 15:59 antspyx.libs/libITKIOVTK-5-c91247dc.3.so.1 236584 04-13-2022 15:59 antspyx.libs/libITKIOPNG-5-c368b6c6.3.so.1 856720 04-13-2022 15:59 antspyx.libs/libitkhdf5_cpp-shared-5-25b86089.3.so.1 75208 04-13-2022 15:59 antspyx.libs/libITKLabelMap-5-8820f3fa.3.so.1 322008 04-13-2022 15:59 antspyx.libs/libITKIOMeshOFF-5-3fb02870.3.so.1 139208 04-13-2022 15:59 antspyx.libs/libITKVTK-5-8f97fa3a.3.so.1 400680 04-13-2022 15:59 antspyx.libs/libITKIOTIFF-5-d178402b.3.so.1 3897784 04-13-2022 15:59 antspyx.libs/libitkgdcmMSFF-5-f7a8c9e7.3.so.1 454672 04-13-2022 15:59 antspyx.libs/libITKIOImageBase-5-105668d8.3.so.1 11357 04-13-2022 15:59 antspyx-0.3.2+hri.0.dist-info/LICENSE 5 04-13-2022 15:59 antspyx-0.3.2+hri.0.dist-info/top_level.txt 5836 04-13-2022 15:59 antspyx-0.3.2+hri.0.dist-info/METADATA 26180 04-13-2022 15:59 antspyx-0.3.2+hri.0.dist-info/RECORD 150 04-13-2022 15:59 antspyx-0.3.2+hri.0.dist-info/WHEEL 0 04-13-2022 15:59 ants/learn/ 0 04-13-2022 15:59 ants/utils/ 0 04-13-2022 15:59 ants/lib/ 0 04-13-2022 15:59 ants/contrib/ 0 04-13-2022 15:59 ants/segmentation/ 0 04-13-2022 15:59 ants/viz/ 0 04-13-2022 15:59 ants/core/ 0 04-13-2022 15:59 ants/registration/ 28 04-13-2022 15:59 ants/version.py 221 04-13-2022 15:59 ants/__init__.py 29 04-13-2022 15:59 ants/learn/__init__.py 13566 04-13-2022 15:59 ants/learn/decomposition.py 1007 04-13-2022 15:59 ants/utils/hausdorff_distance.py 2490 04-13-2022 15:59 ants/utils/label_image_centroids.py 3400 04-13-2022 15:59 ants/utils/ndimage_to_list.py 2321 04-13-2022 15:59 ants/utils/denoise_image.py 4863 04-13-2022 15:59 ants/utils/impute.py 2480 04-13-2022 15:59 ants/utils/smooth_image.py 4161 04-13-2022 15:59 ants/utils/morphology.py 2435 04-13-2022 15:59 ants/utils/ants_integrate_velocity_field.py 1624 04-13-2022 15:59 ants/utils/histogram_match_image.py 6473 04-13-2022 15:59 ants/utils/get_neighborhood.py 1397 04-13-2022 15:59 ants/utils/image_to_cluster_images.py 1023 04-13-2022 15:59 ants/utils/label_stats.py 8235 04-13-2022 15:59 ants/utils/fit_bspline_object_to_scattered_data.py 1162 04-13-2022 15:59 ants/utils/label_overlap_measures.py 7974 04-13-2022 15:59 ants/utils/invariant_image_similarity.py 2517 04-13-2022 15:59 ants/utils/channels.py 1500 04-13-2022 15:59 ants/utils/get_centroids.py 1903 04-13-2022 15:59 ants/utils/labels_to_matrix.py 1572 04-13-2022 15:59 ants/utils/convert_nibabel.py 1248 04-13-2022 15:59 ants/utils/__init__.py 5923 04-13-2022 15:59 ants/utils/iMath.py 8429 04-13-2022 15:59 ants/utils/fit_bspline_displacement_field.py 1436 04-13-2022 15:59 ants/utils/label_clusters.py 3976 04-13-2022 15:59 ants/utils/multi_label_morphology.py 1875 04-13-2022 15:59 ants/utils/weingarten_image_curvature.py 819 04-13-2022 15:59 ants/utils/slice_image.py 2609 04-13-2022 15:59 ants/utils/get_mask.py 1536 04-13-2022 15:59 ants/utils/mask_image.py 13623 04-13-2022 15:59 ants/utils/quantile.py 4392 04-13-2022 15:59 ants/utils/crop_image.py 9863 04-13-2022 15:59 ants/utils/bias_correction.py 2969 04-13-2022 15:59 ants/utils/get_ants_data.py 2364 04-13-2022 15:59 ants/utils/process_args.py 4171 04-13-2022 15:59 ants/utils/scalar_rgb_vector.py 2500 04-13-2022 15:59 ants/utils/pad_image.py 1609 04-13-2022 15:59 ants/utils/threshold_image.py 3368 04-13-2022 15:59 ants/utils/simulate_displacement_field.py 1716 04-13-2022 15:59 ants/utils/image_similarity.py 1377 04-13-2022 15:59 ants/utils/mni2tal.py 3211 04-13-2022 15:59 ants/utils/add_noise_to_image.py 4020280 04-13-2022 15:59 ants/lib/antsImageAugment.cpython-37m-x86_64-linux-gnu.so 2131496 04-13-2022 15:59 ants/lib/reflectionMatrix.cpython-37m-x86_64-linux-gnu.so 1353136 04-13-2022 15:59 ants/lib/antsImageHeaderInfo.cpython-37m-x86_64-linux-gnu.so 4966256 04-13-2022 15:59 ants/lib/antsJointFusion.cpython-37m-x86_64-linux-gnu.so 3228216 04-13-2022 15:59 ants/lib/antsImage.cpython-37m-x86_64-linux-gnu.so 5588928 04-13-2022 15:59 ants/lib/antsAffineInitializer.cpython-37m-x86_64-linux-gnu.so 3825976 04-13-2022 15:59 ants/lib/simulateDisplacementField.cpython-37m-x86_64-linux-gnu.so 2685392 04-13-2022 15:59 ants/lib/fitBsplineDisplacementFieldToScatteredData.cpython-37m-x86_64-linux-gnu.so 3811008 04-13-2022 15:59 ants/lib/antsImageMutualInformation.cpython-37m-x86_64-linux-gnu.so 7149608 04-13-2022 15:59 ants/lib/KellyKapowski.cpython-37m-x86_64-linux-gnu.so 9605888 04-13-2022 15:59 ants/lib/iMath.cpython-37m-x86_64-linux-gnu.so 740409280 04-13-2022 15:59 ants/lib/antsRegistration.cpython-37m-x86_64-linux-gnu.so 1745528 04-13-2022 15:59 ants/lib/fsl2antstransform.cpython-37m-x86_64-linux-gnu.so 2451408 04-13-2022 15:59 ants/lib/labelOverlapMeasures.cpython-37m-x86_64-linux-gnu.so 3731456 04-13-2022 15:59 ants/lib/fitBsplineObjectToScatteredData.cpython-37m-x86_64-linux-gnu.so 1576536 04-13-2022 15:59 ants/lib/reorientImage.cpython-37m-x86_64-linux-gnu.so 3302592 04-13-2022 15:59 ants/lib/hausdorffDistance.cpython-37m-x86_64-linux-gnu.so 1369472 04-13-2022 15:59 ants/lib/antsImageUtils.cpython-37m-x86_64-linux-gnu.so 2385968 04-13-2022 15:59 ants/lib/labelStats.cpython-37m-x86_64-linux-gnu.so 7330896 04-13-2022 15:59 ants/lib/antsTransform.cpython-37m-x86_64-linux-gnu.so 2459672 04-13-2022 15:59 ants/lib/padImage.cpython-37m-x86_64-linux-gnu.so 2331872 04-13-2022 15:59 ants/lib/sliceImage.cpython-37m-x86_64-linux-gnu.so 2684680 04-13-2022 15:59 ants/lib/antiAlias.cpython-37m-x86_64-linux-gnu.so 1995440 04-13-2022 15:59 ants/lib/antsImageClone.cpython-37m-x86_64-linux-gnu.so 2349 04-13-2022 15:59 ants/lib/__init__.py 2410568 04-13-2022 15:59 ants/lib/addNoiseToImage.cpython-37m-x86_64-linux-gnu.so 2896464 04-13-2022 15:59 ants/lib/integrateVelocityField.cpython-37m-x86_64-linux-gnu.so 2770168 04-13-2022 15:59 ants/lib/rgbToVector.cpython-37m-x86_64-linux-gnu.so 4149472 04-13-2022 15:59 ants/lib/ThresholdImage.cpython-37m-x86_64-linux-gnu.so 3684768 04-13-2022 15:59 ants/lib/sccaner.cpython-37m-x86_64-linux-gnu.so 2096816 04-13-2022 15:59 ants/lib/getNeighborhoodMatrix.cpython-37m-x86_64-linux-gnu.so 4499960 04-13-2022 15:59 ants/lib/antsImageToImageMetric.cpython-37m-x86_64-linux-gnu.so 5336496 04-13-2022 15:59 ants/lib/DenoiseImage.cpython-37m-x86_64-linux-gnu.so 8911048 04-13-2022 15:59 ants/lib/Atropos.cpython-37m-x86_64-linux-gnu.so 3318992 04-13-2022 15:59 ants/lib/CreateJacobianDeterminantImage.cpython-37m-x86_64-linux-gnu.so 3287568 04-13-2022 15:59 ants/lib/TileImages.cpython-37m-x86_64-linux-gnu.so 2768288 04-13-2022 15:59 ants/lib/cropImage.cpython-37m-x86_64-linux-gnu.so 1966816 04-13-2022 15:59 ants/lib/mergeChannels.cpython-37m-x86_64-linux-gnu.so 8867168 04-13-2022 15:59 ants/lib/ResampleImage.cpython-37m-x86_64-linux-gnu.so 2648616 04-13-2022 15:59 ants/lib/SmoothImage.cpython-37m-x86_64-linux-gnu.so 2690464 04-13-2022 15:59 ants/lib/weingartenImageCurvature.cpython-37m-x86_64-linux-gnu.so 15239160 04-13-2022 15:59 ants/lib/antsApplyTransforms.cpython-37m-x86_64-linux-gnu.so 2681224 04-13-2022 15:59 ants/lib/fitBsplineDisplacementField.cpython-37m-x86_64-linux-gnu.so 4136936 04-13-2022 15:59 ants/lib/LabelGeometryMeasures.cpython-37m-x86_64-linux-gnu.so 6283760 04-13-2022 15:59 ants/lib/antsApplyTransformsToPoints.cpython-37m-x86_64-linux-gnu.so 3980880 04-13-2022 15:59 ants/lib/readImage.cpython-37m-x86_64-linux-gnu.so 6521816 04-13-2022 15:59 ants/lib/N3BiasFieldCorrection.cpython-37m-x86_64-linux-gnu.so 2399456 04-13-2022 15:59 ants/lib/readTransform.cpython-37m-x86_64-linux-gnu.so 2303216 04-13-2022 15:59 ants/lib/reorientImage2.cpython-37m-x86_64-linux-gnu.so 2579432 04-13-2022 15:59 ants/lib/histogramMatchImage.cpython-37m-x86_64-linux-gnu.so 5698032 04-13-2022 15:59 ants/lib/N4BiasFieldCorrection.cpython-37m-x86_64-linux-gnu.so 3949336 04-13-2022 15:59 ants/lib/LabelClustersUniquely.cpython-37m-x86_64-linux-gnu.so 4453656 04-13-2022 15:59 ants/lib/CreateTiledMosaic.cpython-37m-x86_64-linux-gnu.so 3056288 04-13-2022 15:59 ants/lib/ConvertScalarImageToRGB.cpython-37m-x86_64-linux-gnu.so 0 04-13-2022 15:59 ants/contrib/sampling/ 0 04-13-2022 15:59 ants/contrib/bids/ 0 04-13-2022 15:59 ants/contrib/sklearn_interface/ 59 04-13-2022 15:59 ants/contrib/__init__.py 21671 04-13-2022 15:59 ants/contrib/sampling/affine2d.py 24051 04-13-2022 15:59 ants/contrib/sampling/affine3d.py 24297 04-13-2022 15:59 ants/contrib/sampling/transforms.py 75 04-13-2022 15:59 ants/contrib/sampling/__init__.py 22 04-13-2022 15:59 ants/contrib/bids/__init__.py 3032 04-13-2022 15:59 ants/contrib/bids/cohort.py 37 04-13-2022 15:59 ants/contrib/sklearn_interface/__init__.py 5900 04-13-2022 15:59 ants/contrib/sklearn_interface/sklearn_registration.py 2134 04-13-2022 15:59 ants/segmentation/prior_based_segmentation.py 968 04-13-2022 15:59 ants/segmentation/otsu.py 1955 04-13-2022 15:59 ants/segmentation/kelly_kapowski.py 1421 04-13-2022 15:59 ants/segmentation/label_geometry_measures.py 401 04-13-2022 15:59 ants/segmentation/__init__.py 1101 04-13-2022 15:59 ants/segmentation/anti_alias.py 6278 04-13-2022 15:59 ants/segmentation/functional_lung_segmentation.py 1247 04-13-2022 15:59 ants/segmentation/kmeans.py 18925 04-13-2022 15:59 ants/segmentation/joint_label_fusion.py 5106 04-13-2022 15:59 ants/segmentation/fuzzy_spatial_cmeans_segmentation.py 5204 04-13-2022 15:59 ants/segmentation/atropos.py 4152 04-13-2022 15:59 ants/viz/create_tiled_mosaic.py 26238 04-13-2022 15:59 ants/viz/volume.py 139 04-13-2022 15:59 ants/viz/__init__.py 31219 04-13-2022 15:59 ants/viz/surface.py 87442 04-13-2022 15:59 ants/viz/plot.py 5503 04-13-2022 15:59 ants/viz/render_surface_function.py 3155 04-13-2022 15:59 ants/core/ants_metric_io.py 33118 04-13-2022 15:59 ants/core/ants_image.py 17883 04-13-2022 15:59 ants/core/ants_image_io.py 177 04-13-2022 15:59 ants/core/__init__.py 14318 04-13-2022 15:59 ants/core/ants_transform.py 9158 04-13-2022 15:59 ants/core/ants_transform_io.py 4438 04-13-2022 15:59 ants/core/ants_metric.py 3143 04-13-2022 15:59 ants/registration/build_template.py 1376 04-13-2022 15:59 ants/registration/symmetrize_image.py 452 04-13-2022 15:59 ants/registration/__init__.py 3991 04-13-2022 15:59 ants/registration/create_warped_grid.py 5955 04-13-2022 15:59 ants/registration/resample_image.py 1024 04-13-2022 15:59 ants/registration/metrics.py 1533 04-13-2022 15:59 ants/registration/reflect_image.py 3033 04-13-2022 15:59 ants/registration/reorient_image.py 63183 04-13-2022 15:59 ants/registration/interface.py 1750 04-13-2022 15:59 ants/registration/make_points_image.py 1708 04-13-2022 15:59 ants/registration/create_jacobian_determinant_image.py 1359 04-13-2022 15:59 ants/registration/fsl2antstransform.py 2581 04-13-2022 15:59 ants/registration/landmark_transforms.py 12151 04-13-2022 15:59 ants/registration/apply_transforms.py 2116 04-13-2022 15:59 ants/registration/affine_initializer.py --------- ------- 1061912019 270 filesSample benchmark of
auditwheel repairtimeProposed change
Note the speedup of ~3.6x in
realtime for this example.usertime is not much changed so this is probably mostly I/O savings.[root@2b2bee6ed3f3 wheelhouse]# time python3.7 -m auditwheel repair antspyx-0.3.2+hri.0-cp37-cp37m-linux_x86_64.whl -w wheelhouse-new INFO:auditwheel.main_repair:Repairing antspyx-0.3.2+hri.0-cp37-cp37m-linux_x86_64.whl INFO:auditwheel.wheeltools:Previous filename tags: linux_x86_64 INFO:auditwheel.wheeltools:New filename tags: manylinux_2_17_x86_64, manylinux2014_x86_64 INFO:auditwheel.wheeltools:Previous WHEEL info tags: cp37-cp37m-linux_x86_64 INFO:auditwheel.wheeltools:New WHEEL info tags: cp37-cp37m-manylinux_2_17_x86_64, cp37-cp37m-manylinux2014_x86_64 INFO:auditwheel.main_repair: Fixed-up wheel written to /project/wheelhouse/wheelhouse-new/antspyx-0.3.2+hri.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl real 1m31.075s user 1m6.525s sys 0m9.853sCurrent version of
auditwheel[root@2b2bee6ed3f3 wheelhouse]# time python3.7 -m auditwheel repair antspyx-0.3.2+hri.0-cp37-cp37m-linux_x86_64.whl -w wheelhouse-old INFO:auditwheel.main_repair:Repairing antspyx-0.3.2+hri.0-cp37-cp37m-linux_x86_64.whl INFO:auditwheel.wheeltools:Previous filename tags: linux_x86_64 INFO:auditwheel.wheeltools:New filename tags: manylinux_2_17_x86_64, manylinux2014_x86_64 INFO:auditwheel.wheeltools:Previous WHEEL info tags: cp37-cp37m-linux_x86_64 INFO:auditwheel.wheeltools:New WHEEL info tags: cp37-cp37m-manylinux_2_17_x86_64, cp37-cp37m-manylinux2014_x86_64 INFO:auditwheel.main_repair: Fixed-up wheel written to /project/wheelhouse/wheelhouse-old/antspyx-0.3.2+hri.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl real 5m28.189s user 1m37.816s sys 2m53.355s