Merge branch 'main' into dependabot/pip/jinja2-3.1.4

.ci_support/environment-docs.yml

@@ -19,7 +19,7 @@ dependencies:
 - pympipool =0.8.1
 - pysqa =0.1.20
 - pytables =3.9.2
-- sqlalchemy =2.0.29
+- sqlalchemy =2.0.30
 - tqdm =4.66.2
 - traitlets =5.14.3
 - jupyter-book =1.0.0

.ci_support/environment.yml

@@ -19,6 +19,6 @@ dependencies:
 - pympipool =0.8.1
 - pysqa =0.1.20
 - pytables =3.9.2
-- sqlalchemy =2.0.29
+- sqlalchemy =2.0.30
 - tqdm =4.66.2
 - traitlets =5.14.3

binder/postBuild

@@ -1,11 +1,9 @@
 # pip install master
-pip install .
+pip install versioneer[toml]==0.29
+pip install . --no-deps --no-build-isolation
+
+# copy notebooks
+mv notebooks/*.ipynb .
 
 # clean up
-if [ -d "notebooks" ]; then
-    mv notebooks/* .
-fi
-if [ -d "${HOME}/pyiron_base" ]; then
-    rm -r ${HOME}/binder ${HOME}/.ci_support ${HOME}/.github ${HOME}/pyiron_base ${HOME}/tests ${HOME}/notebooks
-    rm ${HOME}/LICENSE ${HOME}/MANIFEST.in ${HOME}/setup.cfg ${HOME}/setup.py ${HOME}/versioneer.py ${HOME}/CONTRIBUTING.rst ${HOME}/README.rst ${HOME}/CODE_OF_CONDUCT.md
-fi
+rm -rf .ci_support .github binder docs notebooks pyiron_base pyiron_base.egg-info specs test_benchmarks tests update_scripts .coveralls.yml .gitattributes .gitignore .gitpod .readthedocs.yml .wci.yml CHANGELOG.md CITATION.cff CODE_OF_CONDUCT.md CONTRIBUTING.rst LICENSE MANIFEST.in README.md pyproject.toml setup.py build

docs/_config.yml

@@ -6,8 +6,9 @@ execute:
   execute_notebooks           : off
 
 repository:
-    url                       : https://github.com/pyiron/pyiron_base
-    path_to_book              : ""
+  url                       : https://github.com/pyiron/pyiron_base
+html:
+  use_repository_button: true
 
 launch_buttons:
   notebook_interface          : jupyterlab
@@ -22,4 +23,4 @@ sphinx:
   - 'sphinx.ext.autosummary'
   config:
     autosummary_generate: True
-    templates_path: ['_templates']
+    templates_path: ['_templates']

pyproject.toml

@@ -37,7 +37,7 @@ dependencies = [
     "pyfileindex==0.0.24",
     "pympipool==0.8.1",
     "pysqa==0.1.20",
-    "sqlalchemy==2.0.29",
+    "sqlalchemy==2.0.30",
     "tables==3.9.2",
     "tqdm==4.66.2",
     "traitlets==5.14.3",