[skip-ci] Add cftime groupby, resample benchmarks #7795

dcherian · 2023-04-28T15:49:39Z

asv_bench/benchmarks/groupby.py

dcherian · 2023-05-01T16:01:59Z

I'm not sure why asv can't create the env for benchmarking.

+ echo 'Baseline:  25d9a28e12141b9b5e4a79454eb76ddd2ee2bc4d (pydata:main)'
ram [7110632]: Baseline:  25d9a28e12141b9b5e4a79454eb76ddd2ee2bc4d (pydata:main)
+ echo 'Contender: 4ca69efdf7e5e3fc661e5ec3ae618d102a374f32 (dcherian:bench-cftime-groupby)'
Contender: 4ca69efdf7e5e3fc661e5ec3ae618d102a374f32 (dcherian:bench-cftime-groupby)
++ which conda
+ export CONDA_EXE=/usr/bin/conda
+ CONDA_EXE=/usr/bin/conda
+ ASV_OPTIONS='--split --show-stderr --factor 1.5'
+ asv continuous --split --show-stderr --factor 1.5 25d9a28e12141b9b5e4a79454eb76ddd2ee2bc4d 4ca69efdf7e5e3fc661e5ec3ae618d102a374f32
+ tee benchmarks.log
+ sed '/Traceback \|failed$\|PERFORMANCE DECREASED/ s/^/::error::/'
Traceback (most recent call last):
  File "/home/runner/micromamba-root/envs/xarray-tests/bin/asv", line 10, in <module>
    sys.exit(main())
  File "/home/runner/micromamba-root/envs/xarray-tests/lib/python3.10/site-packages/asv/main.py", line 38, in main
    result = args.func(args)
  File "/home/runner/micromamba-root/envs/xarray-tests/lib/python3.10/site-packages/asv/commands/__init__.py", line 49, in run_from_args
    return cls.run_from_conf_args(conf, args)
  File "/home/runner/micromamba-root/envs/xarray-tests/lib/python3.10/site-packages/asv/commands/continuous.py", line 75, in run_from_conf_args
    return cls.run(
  File "/home/runner/micromamba-root/envs/xarray-tests/lib/python3.10/site-packages/asv/commands/continuous.py", line 114, in run
    result = Run.run(
  File "/home/runner/micromamba-root/envs/xarray-tests/lib/python3.10/site-packages/asv/commands/run.py", line 294, in run
    Setup.perform_setup(environments, parallel=parallel)
  File "/home/runner/micromamba-root/envs/xarray-tests/lib/python3.10/site-packages/asv/commands/setup.py", line 89, in perform_setup
    list(map(_create, environments))
  File "/home/runner/micromamba-root/envs/xarray-tests/lib/python3.10/site-packages/asv/commands/setup.py", line 21, in _create
    env.create()
  File "/home/runner/micromamba-root/envs/xarray-tests/lib/python3.10/site-packages/asv/environment.py", line 704, in create
    self._setup()
  File "/home/runner/micromamba-root/envs/xarray-tests/lib/python3.10/site-packages/asv/plugins/conda.py", line 174, in _setup
    self._run_conda(['env', 'create', '-f', env_file_name,
  File "/home/runner/micromamba-root/envs/xarray-tests/lib/python3.10/site-packages/asv/plugins/conda.py", line 227, in _run_conda
    return util.check_output([conda] + args, env=env)
  File "/home/runner/micromamba-root/envs/xarray-tests/lib/python3.10/site-packages/asv/util.py", line 754, in check_output
    raise ProcessError(args, retcode, stdout, stderr)
asv.util.ProcessError: Command '/usr/bin/conda env create -f /tmp/tmphnyugp42.yml -p /home/runner/work/xarray/xarray/asv_bench/.asv/env/df282ba4a530a0853b7f9108ec3ff02d --force' returned non-zero exit status 1
· Creating environments
·· Error running /usr/bin/conda env create -f /tmp/tmphnyugp42.yml -p /home/runner/work/xarray/xarray/asv_bench/.asv/env/df282ba4a530a0853b7f9108ec3ff02d --force (exit status 1)
   STDOUT -------->
   
   STDERR -------->
   
   SpecNotFound: /tmp/tmphnyugp42.yml is not a valid yaml file.

Illviljan · 2023-05-01T21:41:56Z

Feels like it worked quite recently, has something changed? Benchmarks still works on the flox side.

dcherian · 2023-05-01T21:44:08Z

Yes very frustrating it broke between 5 and 3 days ago

dcherian · 2023-05-01T21:53:34Z

Here's a truncated diff:

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<  Image Release: https://github.com/actions/runner-images/releases/tag/ubuntu20%2F20230417.1
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>  Version: 20230426.1
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<  0f4e99d036b0d6d76a3271e6191eacbc9922662f
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---
>  Received 5491632 of 5491632 (100.0%), 8.7 MBs/sec
>  Cache Size: ~5 MB (5491632 B)
>  [command]/usr/bin/tar -xf /home/runner/work/_temp/8bf4827f-8427-494a-86a7-047343a5e85a/cache.tgz -P -C /home/runner/work/xarray/xarray -z
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<  Cache hit for key 'micromamba-bin https://micro.mamba.pm/api/micromamba/linux-64/latest Wed Apr 26 2023 YYY'
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<    + coverage                          7.2.3  py310h1fa729e_0          conda-forge/linux-64     282kB
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<  �[36;1mecho "Contender: 0f4e99d036b0d6d76a3271e6191eacbc9922662f"�[0m
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>  �[36;1mecho "Contender: a220022e7ef8d3df68619643954352fa39394ea8"�[0m
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<  �[36;1masv continuous $ASV_OPTIONS v2023.04.2  0f4e99d036b0d6d76a3271e6191eacbc9922662f \�[0m
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>  �[36;1masv continuous $ASV_OPTIONS v2023.04.2  a220022e7ef8d3df68619643954352fa39394ea8 \�[0m
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<  · No information stored about machine 'fv-az133-41'. I know about nothing.
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<  machine [fv-az133-41]: 2. os:  The OS type and version of this machine.  For example,
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<  ram [7110636]: Baseline: v2023.04.2 
<  + echo 'Contender: 0f4e99d036b0d6d76a3271e6191eacbc9922662f'
<  Contender: 0f4e99d036b0d6d76a3271e6191eacbc9922662f
---
>  + echo 'Contender: a220022e7ef8d3df68619643954352fa39394ea8'
>  ram [7110632]: Baseline: v2023.04.2 
>  Contender: a220022e7ef8d3df68619643954352fa39394ea8
1772d1789
<  + asv continuous --split --show-stderr --factor 1.5 v2023.04.2 0f4e99d036b0d6d76a3271e6191eacbc9922662f
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>  Traceback (most recent call last):
>    File "/home/runner/micromamba-root/envs/xarray-tests/bin/asv", line 10, in <module>
>      sys.exit(main())
>    File "/home/runner/micromamba-root/envs/xarray-tests/lib/python3.10/site-packages/asv/main.py", line 38, in main
>      result = args.func(args)
>    File "/home/runner/micromamba-root/envs/xarray-tests/lib/python3.10/site-packages/asv/commands/__init__.py", line 49, in run_from_args
>      return cls.run_from_conf_args(conf, args)
>    File "/home/runner/micromamba-root/envs/xarray-tests/lib/python3.10/site-packages/asv/commands/continuous.py", line 75, in run_from_conf_args
>      return cls.run(
>    File "/home/runner/micromamba-root/envs/xarray-tests/lib/python3.10/site-packages/asv/commands/continuous.py", line 114, in run
>      result = Run.run(
>    File "/home/runner/micromamba-root/envs/xarray-tests/lib/python3.10/site-packages/asv/commands/run.py", line 294, in run
>      Setup.perform_setup(environments, parallel=parallel)
>    File "/home/runner/micromamba-root/envs/xarray-tests/lib/python3.10/site-packages/asv/commands/setup.py", line 89, in perform_setup
>      list(map(_create, environments))
>    File "/home/runner/micromamba-root/envs/xarray-tests/lib/python3.10/site-packages/asv/commands/setup.py", line 21, in _create
>      env.create()
>    File "/home/runner/micromamba-root/envs/xarray-tests/lib/python3.10/site-packages/asv/environment.py", line 704, in create
>      self._setup()
>    File "/home/runner/micromamba-root/envs/xarray-tests/lib/python3.10/site-packages/asv/plugins/conda.py", line 174, in _setup
>      self._run_conda(['env', 'create', '-f', env_file_name,
>    File "/home/runner/micromamba-root/envs/xarray-tests/lib/python3.10/site-packages/asv/plugins/conda.py", line 227, in _run_conda
>      return util.check_output([conda] + args, env=env)
>    File "/home/runner/micromamba-root/envs/xarray-tests/lib/python3.10/site-packages/asv/util.py", line 754, in check_output
>      raise ProcessError(args, retcode, stdout, stderr)
>  asv.util.ProcessError: Command '/usr/bin/conda env create -f /tmp/tmp4i32rw09.yml -p /home/runner/work/xarray/xarray/asv_bench/.asv/env/df282ba4a530a0853b7f9108ec3ff02d --force' returned non-zero exit status 1
1776,1827c1820,1826
<  · Discovering benchmarks
<  ·· Uninstalling from conda-py3.10-bottleneck-cftime-dask-distributed-flox-netcdf4-numpy-numpy_groupies-pandas-scipy-setuptools_scm-sparse
<  ·· Building 0f4e99d0 <main> for conda-py3.10-bottleneck-cftime-dask-distributed-flox-netcdf4-numpy-numpy_groupies-pandas-scipy-setuptools_scm-sparse
<  ·· Installing 0f4e99d0 <main> into conda-py3.10-bottleneck-cftime-dask-distributed-flox-netcdf4-numpy-numpy_groupies-pandas-scipy-setuptools_scm-sparse
<  · Running 362 total benchmarks (2 commits * 1 environments * 181 benchmarks)
<  [  0.00%] · For xarray commit 91f14c9b <v2023.04.2> (round 1/2):
<  [  0.00%] ·· Building for conda-py3.10-bottleneck-cftime-dask-distributed-flox-netcdf4-numpy-numpy_groupies-pandas-scipy-setuptools_scm-sparse

dcherian · 2023-05-01T22:13:03Z

asv run -v failed locally and printed out the yaml file. For some reason channels is empty

·· Error running /Users/dcherian/mambaforge/bin/conda env create -f /var/folders/yp/rzgd0f7n5zbcbf5dg73sfb8ntv3xxm/T/tmpbusmg2a0.yml -p /Users/dcherian/work/python/xarray/asv_bench/.asv/env/df282ba4a530a0853b7f9108ec3ff02d --force (exit status 1)
·· conda env create/update failed: in /Users/dcherian/work/python/xarray/asv_bench/.asv/env/df282ba4a530a0853b7f9108ec3ff02d with:
   name: conda-py3.10-bottleneck-cftime-dask-distributed-flox-netcdf4-numpy-numpy_groupies-pandas-scipy-setuptools_scm-sparse
   channels:
   dependencies:
      - python=3.10
      - wheel
      - pip
      - setuptools_scm
      - numpy
      - pandas
      - netcdf4
      - scipy
      - bottleneck
      - dask
      - distributed
      - flox
      - numpy_groupies
      - sparse
      - cftime

.github/workflows/benchmarks.yml

dcherian · 2023-05-01T22:23:53Z

well that was it apparently 🤷🏾‍♂️

asv_bench/benchmarks/groupby.py

dcherian · 2023-05-02T15:56:48Z

Thanks @Illviljan I'm merging so I can run benchmarks on a few other PRs

* main: Introduce Grouper objects internally (pydata#7561) [skip-ci] Add cftime groupby, resample benchmarks (pydata#7795) Fix groupby binary ops when grouped array is subset relative to other (pydata#7798) adjust the deprecation policy for python (pydata#7793) [pre-commit.ci] pre-commit autoupdate (pydata#7803) Allow the label run-upstream to run upstream CI (pydata#7787) Update asv links in contributing guide (pydata#7801) Implement DataArray.to_dask_dataframe() (pydata#7635) `ds.to_dict` with data as arrays, not lists (pydata#7739) Add lshift and rshift operators (pydata#7741) Use canonical name for set_horizonalalignment over alias set_ha (pydata#7786) Remove pandas<2 pin (pydata#7785) [pre-commit.ci] pre-commit autoupdate (pydata#7783)

trexfeathers · 2023-05-24T16:07:58Z

If you're curious what happened, we had the same problem: SciTools/iris#5280 (comment)

Just wish I'd spotted this sooner but it's quite hard to follow two organisations' repos 😆

[skip-ci] Add cftime groupby, resample benchmarks

79695e5

xref pydata#7730

dcherian added the run-benchmark Run the ASV benchmark workflow label Apr 28, 2023

github-actions bot added the topic-performance label Apr 28, 2023

headtr1ck reviewed Apr 30, 2023

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github-actions bot added the Automation Github bots, testing workflows, release automation label May 1, 2023

[skip-ci]try setting temp dir

07996c7

dcherian force-pushed the bench-cftime-groupby branch from ecbd13a to 07996c7 Compare May 1, 2023 17:54

[skip-ci] try mamba?

da076e6

dcherian force-pushed the bench-cftime-groupby branch from c08c899 to da076e6 Compare May 1, 2023 21:27

dcherian added 2 commits May 1, 2023 15:56

[skip-ci] increase conda verbosity

f2dc76c

[skip-ci] specify channels

5a56cb9

dcherian force-pushed the bench-cftime-groupby branch from 5ea52f7 to 5a56cb9 Compare May 1, 2023 22:12

dcherian commented May 1, 2023

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[skip-ci] Update .github/workflows/benchmarks.yml

358b0a2

dcherian added 3 commits May 1, 2023 21:42

[skip-ci] bugfix

648658b

[skip-ci] Parameterize use_flox

9510678

[skip-ci] cleanup

ab655c9

dcherian requested a review from Illviljan May 2, 2023 04:13

Illviljan reviewed May 2, 2023

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dcherian added 2 commits May 2, 2023 08:40

[skip-ci] fixes

dfb51a7

[skip-ci] fix resample parameterizing

00fd3be

dcherian merged commit da8746b into pydata:main May 2, 2023

dcherian deleted the bench-cftime-groupby branch May 2, 2023 15:56

dcherian mentioned this pull request Jun 15, 2023

Comprehensive benchmarking suite #4648

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[skip-ci] Add cftime groupby, resample benchmarks #7795

[skip-ci] Add cftime groupby, resample benchmarks #7795

dcherian commented Apr 28, 2023

dcherian commented May 1, 2023

Illviljan commented May 1, 2023

dcherian commented May 1, 2023

dcherian commented May 1, 2023

dcherian commented May 1, 2023

dcherian commented May 1, 2023

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trexfeathers commented May 24, 2023

[skip-ci] Add cftime groupby, resample benchmarks #7795

[skip-ci] Add cftime groupby, resample benchmarks #7795

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dcherian commented Apr 28, 2023

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Illviljan commented May 1, 2023

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trexfeathers commented May 24, 2023