Make release v22.9

.bettercodehub.yml

@@ -1,12 +1,12 @@
 component_depth: 2
 languages:
-- name: python
-  production:
-    exclude:
-      - /docs
-      - /examples
-      - /input
-      - /scripts
-  test:
-    include:
-      - /tests
+  - name: python
+    production:
+      exclude:
+        - /docs
+        - /examples
+        - /input
+        - /scripts
+    test:
+      include:
+        - /tests

.github/ISSUE_TEMPLATE/config.yml

@@ -2,4 +2,4 @@ blank_issues_enabled: true
 contact_links:
   - name: I'm unsure where to go
     url: https://www.pybamm.org/contact
-    about: If you are unsure where to go, then joining our chat is recommended; Just ask!
+    about: If you are unsure where to go, then joining our chat is recommended; Just ask!

.github/ISSUE_TEMPLATE/feature_request.yml

@@ -27,4 +27,4 @@ body:
     id: additional-context
     attributes:
       label: Additional context
-      description: Add any other context or screenshots about the feature request here.
+      description: Add any other context or screenshots about the feature request here.

.github/PULL_REQUEST_TEMPLATE.md

@@ -12,7 +12,6 @@ Please add a line in the relevant section of [CHANGELOG.md](https://github.com/p
 - [ ] Optimization (back-end change that speeds up the code)
 - [ ] Bug fix (non-breaking change which fixes an issue)
 
-
 # Key checklist:
 
 - [ ] No style issues: `$ flake8`

.github/codecov.yml

@@ -1,3 +1,3 @@
 ignore:
   - pybamm/parameters_cli.py
-  - pybamm/install_odes.py
+  - pybamm/install_odes.py

.github/release_checklist.md

@@ -1,4 +1,5 @@
 - Run `scripts/update_version.py` to
+
   - Increment version number in
     - `pybamm/version.py`
     - `docs/conf.py`
@@ -8,4 +9,4 @@
   - Update `CHANGELOG.md` with a summary of the release
 
 - Update jax and jaxlib to latest version in `pybamm.util` and fix any bugs that arise
-- If building wheels on Windows gives a `vcpkg` related error - revert the baseline of default-registry to a stable commit in `vcpkg-configuration.json` 
+- If building wheels on Windows gives a `vcpkg` related error - revert the baseline of default-registry to a stable commit in `vcpkg-configuration.json`

.github/workflows/create_release.yml

@@ -17,34 +17,34 @@ jobs:
         python-version: [3.8]
 
     steps:
-    - uses: actions/checkout@v3
-
-    - name: Get current date
-      run: |
-        echo "VERSION=$(date +'v%y.%-m')" >> $GITHUB_ENV
-        echo "TODAY=$(date +'%d')" >> $GITHUB_ENV
-
-    - name: Fail the job if date < 20
-      if: env.TODAY < 20
-      uses: actions/github-script@v5
-      with:
-        script: core.setFailed('This workflow should be triggered only at the end of the month, or else it will create a release for the wrong month.')
-
-    - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v4
-      with:
-        python-version: ${{ matrix.python-version }}
-
-    - name: Install dependencies
-      run: |
-        pip install wheel
-        pip install --editable .
-
-    - name: Get Changelog
-      run: python -c "from scripts.update_version import get_changelog; get_changelog()"
-
-    - name: Create release
-      uses: softprops/action-gh-release@v1
-      with:
-        tag_name: ${{ env.VERSION }}
-        body_path: CHANGELOG.md
+      - uses: actions/checkout@v3
+
+      - name: Get current date
+        run: |
+          echo "VERSION=$(date +'v%y.%-m')" >> $GITHUB_ENV
+          echo "TODAY=$(date +'%d')" >> $GITHUB_ENV
+
+      - name: Fail the job if date < 20
+        if: env.TODAY < 20
+        uses: actions/github-script@v5
+        with:
+          script: core.setFailed('This workflow should be triggered only at the end of the month, or else it will create a release for the wrong month.')
+
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v4
+        with:
+          python-version: ${{ matrix.python-version }}
+
+      - name: Install dependencies
+        run: |
+          pip install wheel
+          pip install --editable .
+
+      - name: Get Changelog
+        run: python -c "from scripts.update_version import get_changelog; get_changelog()"
+
+      - name: Create release
+        uses: softprops/action-gh-release@v1
+        with:
+          tag_name: ${{ env.VERSION }}
+          body_path: CHANGELOG.md

.github/workflows/periodic_benchmarks.yml

@@ -69,8 +69,7 @@ jobs:
           git commit -am "Add new results"
           git push
       - name: Publish results
-        run:
-          |
-            asv publish
-            git fetch origin gh-pages:gh-pages
-            asv gh-pages
+        run: |
+          asv publish
+          git fetch origin gh-pages:gh-pages
+          asv gh-pages

.github/workflows/publish_pypi.yml

@@ -7,7 +7,7 @@ on:
     inputs:
       target:
         description: 'Deployment target. Can be "pypi" or "testpypi"'
-        default: 'pypi'
+        default: "pypi"
 
 jobs:
   build_windows_wheels:
@@ -46,7 +46,7 @@ jobs:
         run: |
           python -m cibuildwheel --output-dir wheelhouse
         env:
-          CIBW_ENVIRONMENT: "PYBAMM_USE_VCPKG=ON VCPKG_ROOT_DIR=$cd/vcpkg VCPKG_DEFAULT_TRIPLET=x64-windows-static-md VCPKG_FEATURE_FLAGS=manifests,registries CMAKE_GENERATOR=\"Visual Studio 17 2022\" CMAKE_GENERATOR_PLATFORM=x64"
+          CIBW_ENVIRONMENT: 'PYBAMM_USE_VCPKG=ON VCPKG_ROOT_DIR=$cd/vcpkg VCPKG_DEFAULT_TRIPLET=x64-windows-static-md VCPKG_FEATURE_FLAGS=manifests,registries CMAKE_GENERATOR="Visual Studio 17 2022" CMAKE_GENERATOR_PLATFORM=x64'
           CIBW_ARCHS: "AMD64"
 
       - name: Upload windows wheels
@@ -56,7 +56,6 @@ jobs:
           path: ./wheelhouse/*.whl
           if-no-files-found: error
 
-
   build_wheels:
     name: Build wheels on ${{ matrix.os }}
     runs-on: ${{ matrix.os }}
@@ -103,7 +102,6 @@ jobs:
           path: ./wheelhouse/*.whl
           if-no-files-found: error
 
-
   build_sdist:
     name: Build sdist
     runs-on: ubuntu-latest
@@ -130,7 +128,6 @@ jobs:
           path: ./dist/*.tar.gz
           if-no-files-found: error
 
-
   publish_pypi:
     name: Upload package to PyPI
     needs: [build_wheels, build_windows_wheels, build_sdist]
@@ -148,15 +145,15 @@ jobs:
         if: |
           github.event.inputs.target == 'pypi' ||
           (github.event_name == 'push' && github.ref == 'refs/heads/main')
-        uses: pypa/gh-action-pypi-publish@master
+        uses: pypa/gh-action-pypi-publish@release/v1
         with:
           user: __token__
           password: ${{ secrets.PYPI_TOKEN }}
           packages_dir: files/
 
       - name: Publish on TestPyPI
         if: github.event.inputs.target == 'testpypi'
-        uses: pypa/gh-action-pypi-publish@master
+        uses: pypa/gh-action-pypi-publish@release/v1
         with:
           user: __token__
           password: ${{ secrets.TESTPYPI_TOKEN }}

.github/workflows/run_benchmarks_over_history.yml

@@ -10,14 +10,14 @@ on:
   workflow_dispatch:
     inputs:
       commit_start:
-        description: 'Identifier of commit from which to start'
-        default: 'v0.1.0'
+        description: "Identifier of commit from which to start"
+        default: "v0.1.0"
       commit_end:
-        description: 'Identifier of commit at which to end'
-        default: 'develop'
+        description: "Identifier of commit at which to end"
+        default: "develop"
       ncommits:
-        description: 'Number of commits to benchmark between commit_start and commit_end'
-        default: '100'
+        description: "Number of commits to benchmark between commit_start and commit_end"
+        default: "100"
 jobs:
   benchmarks:
     runs-on: ubuntu-latest
@@ -80,9 +80,7 @@ jobs:
           git commit -am "Add new results"
           git push
       - name: Publish results
-        run:
-          |
-            asv publish
-            git fetch origin gh-pages:gh-pages
-            asv gh-pages
-
+        run: |
+          asv publish
+          git fetch origin gh-pages:gh-pages
+          asv gh-pages