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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,2 @@ | ||
| # GitHub syntax highlighting | ||
| pixi.lock linguist-language=YAML linguist-generated=true |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
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@@ -27,10 +27,11 @@ jobs: | |
| with: | ||
| python-version: ${{ matrix.python-version }} | ||
| architecture: x64 | ||
| - name: Set up poetry | ||
| uses: snok/install-poetry@v1 | ||
| - name: Install | ||
| run: poetry install --without docs | ||
|
|
||
| - uses: prefix-dev/[email protected] | ||
| with: | ||
| pixi-version: v0.29.0 | ||
| cache: true | ||
|
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| - name: set numba parallel flags | ||
| run: | | ||
|
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@@ -39,13 +40,21 @@ jobs: | |
| - name: Setup r2u | ||
| uses: eddelbuettel/github-actions/r2u-setup@master | ||
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| - name: install R packages | ||
| run: Rscript -e 'install.packages(c("fixest", "broom", "did2s", "clubSandwich", "wildrwolf", "ivDiag"))' | ||
| shell: bash | ||
| - name: Print R version | ||
| run: | | ||
| Rscript -e 'R.version' | ||
| - name: Install R packages | ||
| run: | | ||
| R_LIB_PATH="${{ github.workspace }}/.pixi/envs/dev/lib/R/library" | ||
| mkdir -p $R_LIB_PATH | ||
| Rscript -e ".libPaths('$R_LIB_PATH'); install.packages(c('fixest', 'broom', 'did2s', 'wildrwolf', 'ivDiag', 'car'), lib='/home/runner/work/pyfixest/pyfixest/.pixi/envs/dev/lib/R/library')" | ||
| Rscript -e ".libPaths('$R_LIB_PATH'); install.packages('ritest', lib='/home/runner/work/pyfixest/pyfixest/.pixi/envs/dev/lib/R/library', repos = c('https://grantmcdermott.r-universe.dev'))" | ||
| - name: Run tests | ||
| - name: Run 'regular 'tests | ||
| run: | | ||
| poetry run pytest tests -m "not (extended or slow or plots)" --cov=pyfixest --cov-report=xml | ||
| pixi run tests-regular | ||
| - name: Upload to Codecov | ||
| uses: codecov/codecov-action@v4 | ||
| with: | ||
|
|
@@ -71,10 +80,12 @@ jobs: | |
| with: | ||
| python-version: ${{ matrix.python-version }} | ||
| architecture: x64 | ||
| - name: Set up poetry | ||
| uses: snok/install-poetry@v1 | ||
| - name: Install | ||
| run: poetry install --without docs | ||
|
|
||
| - uses: prefix-dev/[email protected] | ||
| with: | ||
| pixi-version: v0.29.0 | ||
| cache: true | ||
|
|
||
|
|
||
| - name: set numba parallel flags | ||
| run: | | ||
|
|
@@ -83,13 +94,16 @@ jobs: | |
| - name: Setup r2u | ||
| uses: eddelbuettel/github-actions/r2u-setup@master | ||
|
|
||
| - name: install R packages | ||
| run: Rscript -e 'install.packages(c("fixest", "broom", "did2s", "clubSandwich", "wildrwolf", "ivDiag"))' | ||
| shell: bash | ||
| - name: Install R packages | ||
| run: | | ||
| R_LIB_PATH="${{ github.workspace }}/.pixi/envs/dev/lib/R/library" | ||
| mkdir -p $R_LIB_PATH | ||
| Rscript -e ".libPaths('$R_LIB_PATH'); install.packages(c('fixest', 'broom','did2s', 'wildrwolf', 'ivDiag', 'car'), lib='/home/runner/work/pyfixest/pyfixest/.pixi/envs/dev/lib/R/library')" | ||
| Rscript -e ".libPaths('$R_LIB_PATH'); install.packages('ritest', lib='/home/runner/work/pyfixest/pyfixest/.pixi/envs/dev/lib/R/library', repos = c('https://grantmcdermott.r-universe.dev'))" | ||
| - name: Run tests | ||
| - name: Run 'slow 'tests | ||
| run: | | ||
| poetry run pytest tests -m slow --cov=./ --cov-report=xml | ||
| pixi run tests-slow | ||
| #- name: Upload to Codecov | ||
| # uses: codecov/codecov-action@v4 | ||
|
|
@@ -99,47 +113,6 @@ jobs: | |
| # flags: tests-vs-fixest | ||
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| test_notebooks: | ||
| name: "Test Notebooks" | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v3 | ||
|
|
||
| - name: Set up Python | ||
| uses: actions/setup-python@v3 | ||
| with: | ||
| python-version: "3.12" | ||
|
|
||
| - name: Set up poetry | ||
| uses: snok/install-poetry@v1 | ||
|
|
||
| - name: Install dependencies | ||
| run: poetry install | ||
|
|
||
| - name: Set up poetry | ||
| uses: snok/install-poetry@v1 | ||
|
|
||
| - name: Install | ||
| run: poetry install --without docs | ||
| - name: set numba parallel flags | ||
| run: | | ||
| echo "NUMBA_NUM_THREADS=1" >> $GITHUB_ENV | ||
| - name: Setup r2u | ||
| uses: eddelbuettel/github-actions/r2u-setup@master | ||
|
|
||
| - name: install R packages | ||
| run: Rscript -e 'install.packages(c("fixest", "broom", "did2s", "clubSandwich", "wildrwolf", "ivDiag"))' | ||
| shell: bash | ||
|
|
||
| - name: Install TeXlive | ||
| run: sudo apt-get update && sudo apt-get install texlive texlive-publishers texlive-science latexmk cm-super | ||
|
|
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| - name: Run notebooks | ||
| run: | | ||
| poetry install --with docs | ||
| poetry run python scripts/run_notebooks.py | ||
|
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| build-docs: | ||
| name: "Build Docs" | ||
|
|
@@ -152,26 +125,32 @@ jobs: | |
| uses: actions/setup-python@v5 | ||
| with: | ||
| python-version: "3.11" | ||
| - name: Set up poetry | ||
| uses: snok/install-poetry@v1 | ||
| - name: Install dependencies | ||
| run: poetry install --with docs | ||
|
|
||
| - uses: prefix-dev/[email protected] | ||
| with: | ||
| pixi-version: v0.29.0 | ||
| cache: true | ||
|
|
||
| - name: Set up Quarto | ||
| uses: quarto-dev/quarto-actions/setup@v2 | ||
|
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| - name: install tinytex | ||
| run: | | ||
| quarto install tinytex | ||
| - name: Compile docstrings with quartodoc | ||
| run : | | ||
| poetry run quartodoc build --verbose --config docs/_quarto.yml | ||
| pixi run docs-build | ||
| - name: Render docs | ||
| run: | | ||
| poetry run quarto render docs | ||
| pixi run docs-render | ||
| - name: Save docs artifact | ||
| uses: actions/upload-artifact@v4 | ||
| with: | ||
| name: docs-html | ||
| path: docs/_site | ||
|
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|
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| publish-docs: | ||
| name: "Publish Docs" | ||
| runs-on: ubuntu-latest | ||
|
|
||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
|
|
@@ -31,13 +31,10 @@ jobs: | |
| with: | ||
| python-version: ${{ matrix.python-version }} | ||
|
|
||
| # Set up poetry (common to both scenarios) | ||
| - name: Set up poetry | ||
| uses: snok/install-poetry@v1 | ||
|
|
||
| # Install dependencies (common to both scenarios) | ||
| - name: Install dependencies | ||
| run: poetry install --without docs | ||
| - uses: prefix-dev/[email protected] | ||
| with: | ||
| pixi-version: v0.29.0 | ||
| cache: true | ||
|
|
||
| # Set numba parallel flags (common to both scenarios) | ||
| - name: Set numba parallel flags | ||
|
|
@@ -46,16 +43,19 @@ jobs: | |
| - name: Setup r2u | ||
| uses: eddelbuettel/github-actions/r2u-setup@master | ||
|
|
||
| - name: install R packages | ||
| run: Rscript -e 'install.packages(c("fixest", "broom", "did2s", "clubSandwich", "wildrwolf", "ivDiag"))' | ||
| shell: bash | ||
| - name: Install R packages | ||
| run: | | ||
| R_LIB_PATH="${{ github.workspace }}/.pixi/envs/dev/lib/R/library" | ||
| mkdir -p $R_LIB_PATH | ||
| Rscript -e ".libPaths('$R_LIB_PATH'); install.packages(c('fixest', 'broom','clubSandwich', 'did2s', 'wildrwolf', 'ivDiag', 'car'), lib='/home/runner/work/pyfixest/pyfixest/.pixi/envs/dev/lib/R/library')" | ||
| Rscript -e ".libPaths('$R_LIB_PATH'); install.packages('ritest', lib='/home/runner/work/pyfixest/pyfixest/.pixi/envs/dev/lib/R/library', repos = c('https://grantmcdermott.r-universe.dev', 'https://cloud.r-project.org'))" | ||
| # Run tests for PRs with the label "extended" | ||
| - name: Run tests for plots (only on PRs with the 'tests-extended' label) | ||
| if: github.event_name == 'pull_request' && contains(github.event.label.name, 'tests-extended') | ||
| run: poetry run pytest tests -m "extended" --cov=pyfixest --cov-report=xml | ||
| run: pixi run tests-extended | ||
|
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||
| # Run tests for push to master | ||
| - name: Run tests for push to master | ||
| if: github.event_name == 'push' && github.ref == 'refs/heads/master' | ||
| run: poetry run pytest tests -m "extended" --cov=pyfixest --cov-report=xml | ||
| run: pixi run tests-extended | ||
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|---|---|---|
|
|
@@ -10,20 +10,14 @@ jobs: | |
| - name: Set up Python 3.10 | ||
| uses: actions/setup-python@v5 | ||
| with: | ||
| python-version: '3.10' | ||
| - name: Install pypa/build | ||
| run: >- | ||
| python -m | ||
| pip install | ||
| build | ||
| --user | ||
| - name: Build a binary wheel and a source tarball | ||
| run: >- | ||
| python -m | ||
| build | ||
| --sdist | ||
| --wheel | ||
| --outdir dist/ | ||
| python-version: '3.11' | ||
| - uses: prefix-dev/[email protected] | ||
| with: | ||
| pixi-version: v0.29.0 | ||
| cache: true | ||
| - name: Install R packages | ||
| run: | | ||
| pixi run build-pip | ||
| - name: Publish distribution 📦 to PyPI | ||
| if: startsWith(github.ref, 'refs/tags') | ||
| uses: pypa/gh-action-pypi-publish@release/v1 | ||
|
|
||
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