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rm dockerfile comments
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psathyrella committed Feb 25, 2024
1 parent 791053a commit 3bea3d9
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4 changes: 2 additions & 2 deletions Dockerfile
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Expand Up @@ -24,9 +24,9 @@ USER $MAMBA_USER
ARG MAMBA_DOCKERFILE_ACTIVATE=1
RUN micromamba install -y -c conda-forge -c bioconda -cbiocore -c etetoolkit \
python biopython pandas psutil pysam scons seaborn zlib pyyaml scikit-learn \
mafft circlify ete3 # ete_toolchain
mafft circlify ete3
RUN pip install colored-traceback dendropy levenshtein
ENV XDG_RUNTIME_DIR=/tmp/xdgrd # this xdg runtime dir is for plotting (i think it's required for headless/xvfb-run)
ENV XDG_RUNTIME_DIR=/tmp/xdgrd
RUN mkdir /tmp/xdgrd
RUN chmod 0700 /tmp/xdgrd
COPY --chown=$MAMBA_USER:$MAMBA_USER_GID . /partis
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