build

update bcr-phylo + dockerfile #185

	name: build
	on:
	push:
	branches:
	- 'main'
	jobs:
	build:
	runs-on: ubuntu-latest
	env:
	ACTIONS_ALLOW_UNSECURE_COMMANDS: true
	steps:
	- uses: actions/checkout@v3
	- name: Checkout tags
	run: git fetch --unshallow origin +refs/tags/:refs/tags/
	- name: Set git branch variable
	run: echo ::set-env name=BRANCH::$(git branch --show-current)
	- name: Set git tag variable
	run: if [ $BRANCH == "main" ];then echo ::set-env name=TAG::$(git describe --tags);else echo ::set-env name=TAG::$BRANCH;fi
	- name: Checkout submodules
	shell: bash
	run: \|
	auth_header="$(git config --local --get http.https://github.com/.extraheader)"
	git submodule sync --recursive
	git -c "http.extraheader=$auth_header" -c protocol.version=2 submodule update --init --force --recursive --depth=1
	- name: Build the Docker image
	run: docker build . -t quay.io/matsengrp/partis:$TAG
	# - name: Run tests in the Docker image # eh, would need to install simulation stuff to do this, and not worth it at the moment (the quick test is run at the end of the docker build above)
	# run: docker run quay.io/matsengrp/partis:$TAG /bin/bash -c "/partis/test/test.py --run-all"

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