Proksee v1.0.0a6

Changes:

• Modifies the Mash database download procedure to write less output.
• Correctly instructs QUAST to use the user-specified minimum contig size.
• Better handling of Mash for species estimation of large assemblies with many contigs.
• Mash may now be run using parallelization.
• Removed possible security vulnerabilities when running subprocesses.
• Better user input checking.

Proksee v1.0.0a5

Changes:

• Many changes and improvements to the sequence assembly information JSON file.
• Unfiltered and filtered contigs are now produced as output.
• Both the heuristic and species-based evaluations are now always performed.
• Fixed a crash with calling Mash with a command line that was too long.

Proksee v1.0.0a4

Changes:

• Fixed a bug where the software was unable to find the config.json file.
• Fixed the quast version to 5.0.2.

Proksee v1.0.0a3

Changes:

• Removes many temporary and intermediate files from output directory.
• Assembly information JSON file now has more information.

Proksee v1.0.0a2

This release adds the ability to specify the download filepath of the Mash database.

Proksee v1.0.0a1

This is the initial pre-release version of the Proksee assemble and evaluate tools.