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Fix codegen randomness for chip-tool-darwin. (#18276)
We had a race as to who initialized ChipClusters first: the test generation code (which used includeAll=true) or the command-generation code (which did not). Since the first init decides the behavior things were random. The fix is to consistently use includeAll=true in all of the bits in chip-tool and chip-tool-darwin, since that's the desired behavior anyway.
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