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[Iceberg] Support procedure
remove_orphan_files
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presto-iceberg/src/main/java/com/facebook/presto/iceberg/procedure/RemoveOrphanFiles.java
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| /* | ||
| * Licensed under the Apache License, Version 2.0 (the "License"); | ||
| * you may not use this file except in compliance with the License. | ||
| * You may obtain a copy of the License at | ||
| * | ||
| * http://www.apache.org/licenses/LICENSE-2.0 | ||
| * | ||
| * Unless required by applicable law or agreed to in writing, software | ||
| * distributed under the License is distributed on an "AS IS" BASIS, | ||
| * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | ||
| * See the License for the specific language governing permissions and | ||
| * limitations under the License. | ||
| */ | ||
| package com.facebook.presto.iceberg.procedure; | ||
|
|
||
| import com.facebook.airlift.log.Logger; | ||
| import com.facebook.presto.common.type.SqlTimestamp; | ||
| import com.facebook.presto.hive.HdfsContext; | ||
| import com.facebook.presto.hive.HdfsEnvironment; | ||
| import com.facebook.presto.iceberg.IcebergAbstractMetadata; | ||
| import com.facebook.presto.iceberg.IcebergMetadataFactory; | ||
| import com.facebook.presto.iceberg.IcebergUtil; | ||
| import com.facebook.presto.spi.ConnectorSession; | ||
| import com.facebook.presto.spi.PrestoException; | ||
| import com.facebook.presto.spi.SchemaTableName; | ||
| import com.facebook.presto.spi.classloader.ThreadContextClassLoader; | ||
| import com.facebook.presto.spi.procedure.Procedure; | ||
| import com.google.common.collect.ImmutableList; | ||
| import com.google.common.collect.ImmutableSet; | ||
| import org.apache.hadoop.fs.FileSystem; | ||
| import org.apache.hadoop.fs.LocatedFileStatus; | ||
| import org.apache.hadoop.fs.Path; | ||
| import org.apache.hadoop.fs.RemoteIterator; | ||
| import org.apache.iceberg.CatalogUtil; | ||
| import org.apache.iceberg.ContentFile; | ||
| import org.apache.iceberg.ManifestFile; | ||
| import org.apache.iceberg.ManifestFiles; | ||
| import org.apache.iceberg.ManifestReader; | ||
| import org.apache.iceberg.Snapshot; | ||
| import org.apache.iceberg.Table; | ||
|
|
||
| import javax.inject.Inject; | ||
| import javax.inject.Provider; | ||
|
|
||
| import java.io.IOException; | ||
| import java.lang.invoke.MethodHandle; | ||
| import java.util.ArrayList; | ||
| import java.util.HashSet; | ||
| import java.util.List; | ||
| import java.util.Set; | ||
|
|
||
| import static com.facebook.presto.common.block.MethodHandleUtil.methodHandle; | ||
| import static com.facebook.presto.common.type.StandardTypes.TIMESTAMP; | ||
| import static com.facebook.presto.common.type.StandardTypes.VARCHAR; | ||
| import static com.facebook.presto.iceberg.IcebergErrorCode.ICEBERG_FILESYSTEM_ERROR; | ||
| import static com.facebook.presto.iceberg.IcebergErrorCode.ICEBERG_UNKNOWN_MANIFEST_TYPE; | ||
| import static java.lang.String.format; | ||
| import static java.util.Objects.requireNonNull; | ||
| import static java.util.concurrent.TimeUnit.DAYS; | ||
| import static org.apache.iceberg.ReachableFileUtil.metadataFileLocations; | ||
| import static org.apache.iceberg.ReachableFileUtil.statisticsFilesLocations; | ||
|
|
||
| public class RemoveOrphanFiles | ||
| implements Provider<Procedure> | ||
| { | ||
| private static final int REMOVE_UNUSED_FILES_OLDER_THAN_IN_DAYS = 3; | ||
| private static final int BATCH_DELETE_FILES_COUNT = 100; | ||
| private static final Logger LOGGER = Logger.get(RemoveOrphanFiles.class); | ||
| private static final MethodHandle DELETE_ORPHAN_FILES = methodHandle( | ||
| RemoveOrphanFiles.class, | ||
| "removeOrphanFiles", | ||
| ConnectorSession.class, | ||
| String.class, | ||
| String.class, | ||
| SqlTimestamp.class); | ||
| private final IcebergMetadataFactory metadataFactory; | ||
| private final HdfsEnvironment hdfsEnvironment; | ||
|
|
||
| @Inject | ||
| public RemoveOrphanFiles(IcebergMetadataFactory metadataFactory, | ||
| HdfsEnvironment hdfsEnvironment) | ||
| { | ||
| this.metadataFactory = requireNonNull(metadataFactory, "metadataFactory is null"); | ||
| this.hdfsEnvironment = requireNonNull(hdfsEnvironment, "hdfsEnvironment is null"); | ||
| } | ||
|
|
||
| @Override | ||
| public Procedure get() | ||
| { | ||
| return new Procedure( | ||
| "system", | ||
| "remove_orphan_files", | ||
| ImmutableList.of( | ||
| new Procedure.Argument("schema", VARCHAR), | ||
| new Procedure.Argument("table_name", VARCHAR), | ||
| new Procedure.Argument("older_than", TIMESTAMP, false, null)), | ||
| DELETE_ORPHAN_FILES.bindTo(this)); | ||
| } | ||
|
|
||
| public void removeOrphanFiles(ConnectorSession clientSession, String schema, String tableName, SqlTimestamp olderThan) | ||
| { | ||
| try (ThreadContextClassLoader ignored = new ThreadContextClassLoader(getClass().getClassLoader())) { | ||
| doRemoveOrphanFiles(clientSession, schema, tableName, olderThan); | ||
| } | ||
| } | ||
|
|
||
| private void doRemoveOrphanFiles(ConnectorSession clientSession, String schema, String tableName, SqlTimestamp olderThan) | ||
| { | ||
| IcebergAbstractMetadata metadata = (IcebergAbstractMetadata) metadataFactory.create(); | ||
| SchemaTableName schemaTableName = new SchemaTableName(schema, tableName); | ||
| Table icebergTable = IcebergUtil.getIcebergTable(metadata, clientSession, schemaTableName); | ||
|
|
||
| Set<String> processedManifestFilePaths = new HashSet<>(); | ||
| ImmutableSet.Builder<String> validMetadataFileNames = ImmutableSet.builder(); | ||
| ImmutableSet.Builder<String> validDataFileNames = ImmutableSet.builder(); | ||
|
|
||
| for (Snapshot snapshot : icebergTable.snapshots()) { | ||
| if (snapshot.manifestListLocation() != null) { | ||
| validMetadataFileNames.add(extractFileName(snapshot.manifestListLocation())); | ||
| } | ||
|
|
||
| for (ManifestFile manifest : snapshot.allManifests(icebergTable.io())) { | ||
| if (!processedManifestFilePaths.add(manifest.path())) { | ||
| // Already read this manifest | ||
| continue; | ||
| } | ||
|
|
||
| validMetadataFileNames.add(extractFileName(manifest.path())); | ||
| try (ManifestReader<? extends ContentFile<?>> manifestReader = readerForManifest(icebergTable, manifest)) { | ||
| for (ContentFile<?> contentFile : manifestReader) { | ||
| validDataFileNames.add(extractFileName(contentFile.path().toString())); | ||
| } | ||
| } | ||
| catch (IOException e) { | ||
| throw new PrestoException(ICEBERG_FILESYSTEM_ERROR, "Unable to list manifest file content from " + manifest.path(), e); | ||
| } | ||
| } | ||
| } | ||
|
|
||
| metadataFileLocations(icebergTable, false).stream() | ||
| .map(this::extractFileName) | ||
| .forEach(validMetadataFileNames::add); | ||
|
|
||
| statisticsFilesLocations(icebergTable).stream() | ||
| .map(this::extractFileName) | ||
| .forEach(validMetadataFileNames::add); | ||
|
|
||
| validMetadataFileNames.add("version-hint.text"); | ||
|
|
||
| // Remove unused metadata and data files older than 3 days by default | ||
| long expiration = olderThan == null ? | ||
| System.currentTimeMillis() - DAYS.toMillis(REMOVE_UNUSED_FILES_OLDER_THAN_IN_DAYS) : | ||
| olderThan.isLegacyTimestamp() ? olderThan.getMillisUtc() : olderThan.getMillis(); | ||
| scanAndDeleteInvalidFiles(icebergTable, clientSession, schemaTableName, expiration, validDataFileNames.build(), "data"); | ||
| scanAndDeleteInvalidFiles(icebergTable, clientSession, schemaTableName, expiration, validMetadataFileNames.build(), "metadata"); | ||
| } | ||
|
|
||
| private void scanAndDeleteInvalidFiles(Table table, ConnectorSession session, SchemaTableName schemaTableName, long expiration, Set<String> validFiles, String subFolder) | ||
| { | ||
| try { | ||
| List<String> filesToDelete = new ArrayList<>(); | ||
| FileSystem fileSystem = getFileSystem(session, this.hdfsEnvironment, schemaTableName, new Path(table.location())); | ||
| Path subFolderPath = new Path(table.location(), subFolder); | ||
| if (!fileSystem.exists(subFolderPath)) { | ||
| return; | ||
| } | ||
| RemoteIterator<LocatedFileStatus> allFiles = fileSystem.listFiles(subFolderPath, true); | ||
| while (allFiles.hasNext()) { | ||
| LocatedFileStatus entry = allFiles.next(); | ||
| if (entry.getModificationTime() <= expiration && !validFiles.contains(entry.getPath().getName())) { | ||
| filesToDelete.add(entry.getPath().toString()); | ||
| if (filesToDelete.size() >= BATCH_DELETE_FILES_COUNT) { | ||
| LOGGER.debug("Deleting %s files while removing orphan files for table %s", filesToDelete, schemaTableName); | ||
| CatalogUtil.deleteFiles(table.io(), filesToDelete, subFolder, true); | ||
| filesToDelete.clear(); | ||
| } | ||
| } | ||
| else { | ||
| LOGGER.debug("%s retained while removing orphan files %s", entry.getPath().toString(), schemaTableName.getTableName()); | ||
| } | ||
| } | ||
|
|
||
| if (!filesToDelete.isEmpty()) { | ||
| LOGGER.debug("Deleting %s files while removing orphan files for table %s", filesToDelete, schemaTableName); | ||
| CatalogUtil.deleteFiles(table.io(), filesToDelete, subFolder, true); | ||
| } | ||
| } | ||
| catch (IOException e) { | ||
| throw new PrestoException(ICEBERG_FILESYSTEM_ERROR, "Failed accessing data for table: " + schemaTableName, e); | ||
| } | ||
| } | ||
|
|
||
| private String extractFileName(String path) | ||
| { | ||
| return path.substring(path.lastIndexOf('/') + 1); | ||
| } | ||
|
|
||
| private static FileSystem getFileSystem(ConnectorSession clientSession, HdfsEnvironment hdfsEnvironment, SchemaTableName schemaTableName, Path location) | ||
| { | ||
| HdfsContext hdfsContext = new HdfsContext( | ||
| clientSession, | ||
| schemaTableName.getSchemaName(), | ||
| schemaTableName.getTableName(), | ||
| location.getName(), | ||
| true); | ||
|
|
||
| try { | ||
| return hdfsEnvironment.getFileSystem(hdfsContext, location); | ||
| } | ||
| catch (Exception e) { | ||
| throw new PrestoException(ICEBERG_FILESYSTEM_ERROR, format("Error getting file system at path %s", location), e); | ||
| } | ||
| } | ||
|
|
||
| private static ManifestReader<? extends ContentFile<?>> readerForManifest(Table table, ManifestFile manifest) | ||
| { | ||
| switch (manifest.content()) { | ||
| case DATA: | ||
| return ManifestFiles.read(manifest, table.io()); | ||
| case DELETES: | ||
| ManifestFiles.readDeleteManifest(manifest, table.io(), table.specs()); | ||
| default: | ||
| throw new PrestoException(ICEBERG_UNKNOWN_MANIFEST_TYPE, "Unknown manifest file content: " + manifest.content()); | ||
| } | ||
| } | ||
| } |
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