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[Iceberg] Support procedure
remove_orphan_files
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presto-iceberg/src/main/java/com/facebook/presto/iceberg/procedure/RemoveOrphanFiles.java
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/* | ||
* Licensed under the Apache License, Version 2.0 (the "License"); | ||
* you may not use this file except in compliance with the License. | ||
* You may obtain a copy of the License at | ||
* | ||
* http://www.apache.org/licenses/LICENSE-2.0 | ||
* | ||
* Unless required by applicable law or agreed to in writing, software | ||
* distributed under the License is distributed on an "AS IS" BASIS, | ||
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | ||
* See the License for the specific language governing permissions and | ||
* limitations under the License. | ||
*/ | ||
package com.facebook.presto.iceberg.procedure; | ||
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import com.facebook.airlift.log.Logger; | ||
import com.facebook.presto.common.type.SqlTimestamp; | ||
import com.facebook.presto.hive.HdfsContext; | ||
import com.facebook.presto.hive.HdfsEnvironment; | ||
import com.facebook.presto.iceberg.IcebergAbstractMetadata; | ||
import com.facebook.presto.iceberg.IcebergMetadataFactory; | ||
import com.facebook.presto.spi.ConnectorSession; | ||
import com.facebook.presto.spi.PrestoException; | ||
import com.facebook.presto.spi.SchemaTableName; | ||
import com.facebook.presto.spi.classloader.ThreadContextClassLoader; | ||
import com.facebook.presto.spi.procedure.Procedure; | ||
import com.facebook.presto.spi.procedure.Procedure.Argument; | ||
import com.google.common.collect.ImmutableList; | ||
import com.google.common.collect.ImmutableSet; | ||
import org.apache.hadoop.fs.FileSystem; | ||
import org.apache.hadoop.fs.LocatedFileStatus; | ||
import org.apache.hadoop.fs.Path; | ||
import org.apache.hadoop.fs.RemoteIterator; | ||
import org.apache.iceberg.CatalogUtil; | ||
import org.apache.iceberg.ContentFile; | ||
import org.apache.iceberg.ManifestFile; | ||
import org.apache.iceberg.ManifestFiles; | ||
import org.apache.iceberg.ManifestReader; | ||
import org.apache.iceberg.Snapshot; | ||
import org.apache.iceberg.Table; | ||
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import javax.inject.Inject; | ||
import javax.inject.Provider; | ||
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import java.io.IOException; | ||
import java.lang.invoke.MethodHandle; | ||
import java.util.ArrayList; | ||
import java.util.HashSet; | ||
import java.util.List; | ||
import java.util.Set; | ||
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import static com.facebook.presto.common.block.MethodHandleUtil.methodHandle; | ||
import static com.facebook.presto.common.type.StandardTypes.TIMESTAMP; | ||
import static com.facebook.presto.common.type.StandardTypes.VARCHAR; | ||
import static com.facebook.presto.iceberg.IcebergErrorCode.ICEBERG_FILESYSTEM_ERROR; | ||
import static com.facebook.presto.iceberg.IcebergErrorCode.ICEBERG_UNKNOWN_MANIFEST_TYPE; | ||
import static com.facebook.presto.iceberg.IcebergUtil.dataLocation; | ||
import static com.facebook.presto.iceberg.IcebergUtil.getIcebergTable; | ||
import static com.facebook.presto.iceberg.IcebergUtil.metadataLocation; | ||
import static java.lang.String.format; | ||
import static java.util.Objects.requireNonNull; | ||
import static java.util.concurrent.TimeUnit.DAYS; | ||
import static org.apache.hadoop.fs.Path.SEPARATOR; | ||
import static org.apache.iceberg.ReachableFileUtil.metadataFileLocations; | ||
import static org.apache.iceberg.ReachableFileUtil.statisticsFilesLocations; | ||
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public class RemoveOrphanFiles | ||
implements Provider<Procedure> | ||
{ | ||
private static final int REMOVE_UNUSED_FILES_OLDER_THAN_IN_DAYS = 3; | ||
private static final int BATCH_DELETE_FILES_COUNT = 100; | ||
private static final Logger LOGGER = Logger.get(RemoveOrphanFiles.class); | ||
private static final MethodHandle DELETE_ORPHAN_FILES = methodHandle( | ||
RemoveOrphanFiles.class, | ||
"removeOrphanFiles", | ||
ConnectorSession.class, | ||
String.class, | ||
String.class, | ||
SqlTimestamp.class); | ||
private final IcebergMetadataFactory metadataFactory; | ||
private final HdfsEnvironment hdfsEnvironment; | ||
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@Inject | ||
public RemoveOrphanFiles(IcebergMetadataFactory metadataFactory, | ||
HdfsEnvironment hdfsEnvironment) | ||
{ | ||
this.metadataFactory = requireNonNull(metadataFactory, "metadataFactory is null"); | ||
this.hdfsEnvironment = requireNonNull(hdfsEnvironment, "hdfsEnvironment is null"); | ||
} | ||
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@Override | ||
public Procedure get() | ||
{ | ||
return new Procedure( | ||
"system", | ||
"remove_orphan_files", | ||
ImmutableList.of( | ||
new Argument("schema", VARCHAR), | ||
new Argument("table_name", VARCHAR), | ||
new Argument("older_than", TIMESTAMP, false, null)), | ||
DELETE_ORPHAN_FILES.bindTo(this)); | ||
} | ||
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public void removeOrphanFiles(ConnectorSession clientSession, String schema, String tableName, SqlTimestamp olderThan) | ||
{ | ||
try (ThreadContextClassLoader ignored = new ThreadContextClassLoader(getClass().getClassLoader())) { | ||
doRemoveOrphanFiles(clientSession, schema, tableName, olderThan); | ||
} | ||
} | ||
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private void doRemoveOrphanFiles(ConnectorSession clientSession, String schema, String tableName, SqlTimestamp olderThan) | ||
{ | ||
IcebergAbstractMetadata metadata = (IcebergAbstractMetadata) metadataFactory.create(); | ||
SchemaTableName schemaTableName = new SchemaTableName(schema, tableName); | ||
Table icebergTable = getIcebergTable(metadata, clientSession, schemaTableName); | ||
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Set<String> processedManifestFilePaths = new HashSet<>(); | ||
ImmutableSet.Builder<String> validMetadataFileNames = ImmutableSet.builder(); | ||
ImmutableSet.Builder<String> validDataFileNames = ImmutableSet.builder(); | ||
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for (Snapshot snapshot : icebergTable.snapshots()) { | ||
if (snapshot.manifestListLocation() != null) { | ||
validMetadataFileNames.add(extractFileName(snapshot.manifestListLocation())); | ||
} | ||
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for (ManifestFile manifest : snapshot.allManifests(icebergTable.io())) { | ||
if (!processedManifestFilePaths.add(manifest.path())) { | ||
// Already read this manifest | ||
continue; | ||
} | ||
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validMetadataFileNames.add(extractFileName(manifest.path())); | ||
try (ManifestReader<? extends ContentFile<?>> manifestReader = readerForManifest(icebergTable, manifest)) { | ||
for (ContentFile<?> contentFile : manifestReader) { | ||
validDataFileNames.add(extractFileName(contentFile.path().toString())); | ||
} | ||
} | ||
catch (IOException e) { | ||
throw new PrestoException(ICEBERG_FILESYSTEM_ERROR, "Unable to list manifest file content from " + manifest.path(), e); | ||
} | ||
} | ||
} | ||
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metadataFileLocations(icebergTable, false).stream() | ||
.map(RemoveOrphanFiles::extractFileName) | ||
.forEach(validMetadataFileNames::add); | ||
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statisticsFilesLocations(icebergTable).stream() | ||
.map(RemoveOrphanFiles::extractFileName) | ||
.forEach(validMetadataFileNames::add); | ||
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// Always reserve `version-hint.text` as it's a shortcut to find the newest version | ||
validMetadataFileNames.add("version-hint.text"); | ||
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// Remove unused metadata and data files older than 3 days by default | ||
// This default value is consistent with Spark procedure `remove_orphan_files` on Iceberg, see: | ||
// https://iceberg.apache.org/docs/1.5.2/spark-procedures/#remove_orphan_files | ||
long expiration = olderThan == null ? | ||
System.currentTimeMillis() - DAYS.toMillis(REMOVE_UNUSED_FILES_OLDER_THAN_IN_DAYS) : | ||
olderThan.isLegacyTimestamp() ? olderThan.getMillisUtc() : olderThan.getMillis(); | ||
scanAndDeleteInvalidFiles(icebergTable, clientSession, schemaTableName, expiration, validDataFileNames.build(), dataLocation(icebergTable)); | ||
scanAndDeleteInvalidFiles(icebergTable, clientSession, schemaTableName, expiration, validMetadataFileNames.build(), metadataLocation(icebergTable)); | ||
} | ||
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private void scanAndDeleteInvalidFiles(Table table, ConnectorSession session, SchemaTableName schemaTableName, long expiration, Set<String> validFiles, String folderFullPath) | ||
{ | ||
try { | ||
List<String> filesToDelete = new ArrayList<>(); | ||
FileSystem fileSystem = getFileSystem(session, this.hdfsEnvironment, schemaTableName, new Path(table.location())); | ||
Path fullPath = new Path(folderFullPath); | ||
if (!fileSystem.exists(fullPath)) { | ||
return; | ||
} | ||
RemoteIterator<LocatedFileStatus> allFiles = fileSystem.listFiles(fullPath, true); | ||
while (allFiles.hasNext()) { | ||
LocatedFileStatus entry = allFiles.next(); | ||
if (entry.getModificationTime() <= expiration && !validFiles.contains(entry.getPath().getName())) { | ||
filesToDelete.add(entry.getPath().toString()); | ||
if (filesToDelete.size() >= BATCH_DELETE_FILES_COUNT) { | ||
LOGGER.debug("Deleting files while removing orphan files for table %s : %s", schemaTableName, filesToDelete); | ||
CatalogUtil.deleteFiles(table.io(), filesToDelete, folderFullPath, true); | ||
filesToDelete.clear(); | ||
} | ||
} | ||
else { | ||
LOGGER.debug("%s retained while removing orphan files %s", entry.getPath().toString(), schemaTableName.getTableName()); | ||
} | ||
} | ||
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if (!filesToDelete.isEmpty()) { | ||
LOGGER.debug("Deleting files while removing orphan files for table %s : %s", schemaTableName, filesToDelete); | ||
CatalogUtil.deleteFiles(table.io(), filesToDelete, folderFullPath, true); | ||
} | ||
} | ||
catch (IOException e) { | ||
throw new PrestoException(ICEBERG_FILESYSTEM_ERROR, "Failed accessing data for table: " + schemaTableName, e); | ||
} | ||
} | ||
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private static String extractFileName(String path) | ||
{ | ||
return path.substring(path.lastIndexOf(SEPARATOR) + 1); | ||
} | ||
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private static FileSystem getFileSystem(ConnectorSession clientSession, HdfsEnvironment hdfsEnvironment, SchemaTableName schemaTableName, Path location) | ||
{ | ||
HdfsContext hdfsContext = new HdfsContext( | ||
clientSession, | ||
schemaTableName.getSchemaName(), | ||
schemaTableName.getTableName(), | ||
location.getName(), | ||
true); | ||
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try { | ||
return hdfsEnvironment.getFileSystem(hdfsContext, location); | ||
} | ||
catch (Exception e) { | ||
throw new PrestoException(ICEBERG_FILESYSTEM_ERROR, format("Error getting file system at path %s", location), e); | ||
} | ||
} | ||
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private static ManifestReader<? extends ContentFile<?>> readerForManifest(Table table, ManifestFile manifest) | ||
{ | ||
switch (manifest.content()) { | ||
case DATA: | ||
return ManifestFiles.read(manifest, table.io()); | ||
case DELETES: | ||
ManifestFiles.readDeleteManifest(manifest, table.io(), table.specs()); | ||
default: | ||
throw new PrestoException(ICEBERG_UNKNOWN_MANIFEST_TYPE, "Unknown manifest file content: " + manifest.content()); | ||
} | ||
} | ||
} |
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