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Update docs
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jleechung committed May 9, 2024
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1 change: 1 addition & 0 deletions README.Rmd
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Expand Up @@ -38,6 +38,7 @@ details, check out:
- a [tweetorial](https://x.com/shyam_lab/status/1762648072360792479?s=20) on BANKSY,
- a set of [vignettes](https://prabhakarlab.github.io/Banksy) showing basic
usage,
- usage compatibility with Seurat ([here](https://github.com/satijalab/seurat-wrappers/blob/master/docs/banksy.md) and [here](https://satijalab.org/seurat/articles/visiumhd_analysis_vignette#identifying-spatially-defined-tissue-domains)),
- a [Python version](https://github.com/prabhakarlab/Banksy_py) of this package,
- a [Zenodo archive](https://zenodo.org/records/10258795) containing scripts to
reproduce the analyses in the paper, and the corresponding
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8 changes: 6 additions & 2 deletions README.md
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Expand Up @@ -24,6 +24,10 @@ datasets. For more details, check out:
on BANKSY,
- a set of [vignettes](https://prabhakarlab.github.io/Banksy) showing
basic usage,
- usage compatibility with Seurat
([here](https://github.com/satijalab/seurat-wrappers/blob/master/docs/banksy.md)
and
[here](https://satijalab.org/seurat/articles/visiumhd_analysis_vignette#identifying-spatially-defined-tissue-domains)),
- a [Python version](https://github.com/prabhakarlab/Banksy_py) of this
package,
- a [Zenodo archive](https://zenodo.org/records/10258795) containing
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Runtime for analysis
</summary>

#> Time difference of 55.9195 secs
#> Time difference of 57.44879 secs

</details>
<details>
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#> [9] GenomicRanges_1.54.1 GenomeInfoDb_1.38.6
#> [11] IRanges_2.36.0 S4Vectors_0.40.2
#> [13] BiocGenerics_0.48.1 MatrixGenerics_1.14.0
#> [15] matrixStats_1.2.0 Banksy_0.99.9
#> [15] matrixStats_1.2.0 Banksy_0.99.12
#>
#> loaded via a namespace (and not attached):
#> [1] tidyselect_1.2.0 viridisLite_0.4.2
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