Thread link

prabhakarlab · Apr 16, 2022 · d413758 · d413758
1 parent 7bc2390
commit d413758
Show file tree

Hide file tree

Showing 26 changed files with 45 additions and 39 deletions.
diff --git a/README.Rmd b/README.Rmd
@@ -32,8 +32,11 @@ BANKSY is able to
 - identify spatial zones sharing the same microenvironment
 
 BANKSY is applicable to a wide array of spatial technologies (e.g. 10x Visium, 
-Slide-seq, MERFISH) and scales well to large datasets. For more details on 
-use-cases and methods, see the [preprint](https://www.biorxiv.org/content/10.1101/2022.04.14.488259v1). 
+Slide-seq, MERFISH) and scales well to large datasets. For more details, check 
+out the [preprint](https://www.biorxiv.org/content/10.1101/2022.04.14.488259v1).
+A gentle introduction to BANKSY is also available [here](https://twitter.com/vipul1891/status/1515323372535644166?s=20&t=Bc6rz8VeWWptF67FejGYfQ)
+as a tweetorial.
+
 
 ## Installation
 

diff --git a/README.md b/README.md
@@ -21,8 +21,11 @@ neighborhood information for clustering, BANKSY is able to
 
 BANKSY is applicable to a wide array of spatial technologies (e.g. 10x
 Visium, Slide-seq, MERFISH) and scales well to large datasets. For more
-details on use-cases and methods, see the
+details, check out the
 [preprint](https://www.biorxiv.org/content/10.1101/2022.04.14.488259v1).
+A gentle introduction to BANKSY is also available
+[here](https://twitter.com/vipul1891/status/1515323372535644166?s=20&t=Bc6rz8VeWWptF67FejGYfQ)
+as a tweetorial.
 
 ## Installation
 

diff --git a/docs/articles/banksy-object.html b/docs/articles/banksy-object.html
diff --git a/docs/articles/banksy-object_files/figure-html/subset2-1.png b/docs/articles/banksy-object_files/figure-html/subset2-1.png
diff --git a/docs/articles/banksy-object_files/figure-html/subset3-1.png b/docs/articles/banksy-object_files/figure-html/subset3-1.png
diff --git a/docs/articles/hippocampus-analysis.html b/docs/articles/hippocampus-analysis.html
diff --git a/docs/articles/hippocampus-analysis_files/figure-html/alluv-1.png b/docs/articles/hippocampus-analysis_files/figure-html/alluv-1.png
diff --git a/docs/articles/hippocampus-analysis_files/figure-html/out-1.png b/docs/articles/hippocampus-analysis_files/figure-html/out-1.png
diff --git a/docs/articles/hippocampus-analysis_files/figure-html/runari-1.png b/docs/articles/hippocampus-analysis_files/figure-html/runari-1.png
diff --git a/docs/articles/hippocampus-analysis_files/figure-html/wrap-1.png b/docs/articles/hippocampus-analysis_files/figure-html/wrap-1.png
diff --git a/docs/articles/hypothalamus-analysis_files/figure-html/cluster-1.png b/docs/articles/hypothalamus-analysis_files/figure-html/cluster-1.png
diff --git a/docs/articles/hypothalamus-analysis_files/figure-html/heatmap-1.png b/docs/articles/hypothalamus-analysis_files/figure-html/heatmap-1.png
diff --git a/docs/articles/hypothalamus-analysis_files/figure-html/pca-1.png b/docs/articles/hypothalamus-analysis_files/figure-html/pca-1.png
diff --git a/docs/articles/single-cell-exp_files/figure-html/unnamed-chunk-5-1.png b/docs/articles/single-cell-exp_files/figure-html/unnamed-chunk-5-1.png
diff --git a/docs/articles/single-cell-exp_files/figure-html/unnamed-chunk-5-2.png b/docs/articles/single-cell-exp_files/figure-html/unnamed-chunk-5-2.png
diff --git a/docs/articles/single-cell-exp_files/figure-html/unnamed-chunk-6-1.png b/docs/articles/single-cell-exp_files/figure-html/unnamed-chunk-6-1.png
diff --git a/docs/index.html b/docs/index.html
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
@@ -7,7 +7,7 @@ articles:
   hippocampus-analysis: hippocampus-analysis.html
   hypothalamus-analysis: hypothalamus-analysis.html
   single-cell-exp: single-cell-exp.html
-last_built: 2022-04-16T07:28Z
+last_built: 2022-04-16T18:04Z
 urls:
   reference: https://prabhakarlab.github.io/Banksy/reference
   article: https://prabhakarlab.github.io/Banksy/articles

diff --git a/docs/reference/getARI.html b/docs/reference/getARI.html
diff --git a/docs/reference/plotARI-1.png b/docs/reference/plotARI-1.png
diff --git a/docs/reference/plotAlluvia-1.png b/docs/reference/plotAlluvia-1.png
diff --git a/docs/reference/plotHeatmap-1.png b/docs/reference/plotHeatmap-1.png
diff --git a/docs/reference/plotReduction-1.png b/docs/reference/plotReduction-1.png
diff --git a/docs/reference/plotScree-1.png b/docs/reference/plotScree-1.png
diff --git a/docs/reference/plotSpatial-1.png b/docs/reference/plotSpatial-1.png
diff --git a/docs/reference/plotSpatialFeatures-1.png b/docs/reference/plotSpatialFeatures-1.png