Reduce vignette fig dpi

prabhakarlab · Jan 3, 2024 · 0356b74 · 0356b74
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Showing 39 changed files with 37 additions and 37 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: Banksy
 Title: Spatial transcriptomic clustering
-Version: 0.99.4
+Version: 0.99.5
 Authors@R: c(
     person(given = "Vipul",
            family = "Singhal",
@@ -19,7 +19,7 @@ Description: Banksy is an R package that incorporates spatial information to
     neighbor-augmented product space which can then be clustered, allowing for
     accurate and spatially-aware cell typing and tissue domain segmentation. 
 Depends:
-     R (>= 4.3.0)
+     R (>= 4.4.0)
 Imports:
     aricode,
     data.table,

diff --git a/docs/404.html b/docs/404.html
diff --git a/docs/LICENSE-text.html b/docs/LICENSE-text.html
diff --git a/docs/articles/batch-correction.html b/docs/articles/batch-correction.html
diff --git a/docs/articles/domain-segment.html b/docs/articles/domain-segment.html
diff --git a/docs/articles/figures/batch-correction-spatial-1.png b/docs/articles/figures/batch-correction-spatial-1.png
diff --git a/docs/articles/figures/batch-correction-umap-1.png b/docs/articles/figures/batch-correction-umap-1.png
diff --git a/docs/articles/figures/multi-sample-spatial-1.png b/docs/articles/figures/multi-sample-spatial-1.png
diff --git a/docs/articles/figures/multi-sample-umap-1.png b/docs/articles/figures/multi-sample-umap-1.png
diff --git a/docs/articles/figures/parameter-selection-spatial-1.png b/docs/articles/figures/parameter-selection-spatial-1.png
diff --git a/docs/articles/index.html b/docs/articles/index.html
diff --git a/docs/articles/multi-sample.html b/docs/articles/multi-sample.html
diff --git a/docs/articles/parameter-selection.html b/docs/articles/parameter-selection.html
diff --git a/docs/authors.html b/docs/authors.html
diff --git a/docs/index.html b/docs/index.html
diff --git a/docs/news/index.html b/docs/news/index.html
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
@@ -6,7 +6,7 @@ articles:
   domain-segment: domain-segment.html
   multi-sample: multi-sample.html
   parameter-selection: parameter-selection.html
-last_built: 2024-01-03T17:16Z
+last_built: 2024-01-03T17:53Z
 urls:
   reference: https://prabhakarlab.github.io/Banksy/reference
   article: https://prabhakarlab.github.io/Banksy/articles

diff --git a/docs/reference/Banksy-package.html b/docs/reference/Banksy-package.html
diff --git a/docs/reference/clusterBanksy.html b/docs/reference/clusterBanksy.html
diff --git a/docs/reference/clusterNames.html b/docs/reference/clusterNames.html
diff --git a/docs/reference/compareClusters.html b/docs/reference/compareClusters.html
diff --git a/docs/reference/computeBanksy.html b/docs/reference/computeBanksy.html
diff --git a/docs/reference/connectClusters.html b/docs/reference/connectClusters.html
diff --git a/docs/reference/getBanksyMatrix.html b/docs/reference/getBanksyMatrix.html
diff --git a/docs/reference/hippocampus.html b/docs/reference/hippocampus.html
diff --git a/docs/reference/index.html b/docs/reference/index.html
diff --git a/docs/reference/rings.html b/docs/reference/rings.html
diff --git a/docs/reference/runBanksyPCA.html b/docs/reference/runBanksyPCA.html
diff --git a/docs/reference/runBanksyUMAP.html b/docs/reference/runBanksyUMAP.html
diff --git a/docs/reference/simulateDataset.html b/docs/reference/simulateDataset.html
diff --git a/docs/reference/smoothLabels.html b/docs/reference/smoothLabels.html
diff --git a/vignettes/batch-correction.Rmd b/vignettes/batch-correction.Rmd
@@ -12,7 +12,7 @@ knitr::opts_chunk$set(
     collapse = TRUE,
     comment = "#>",
     fig.path = "figures/",
-    dpi = 54
+    dpi = 36
 )
 ```
 

diff --git a/vignettes/figures/batch-correction-spatial-1.png b/vignettes/figures/batch-correction-spatial-1.png
diff --git a/vignettes/figures/batch-correction-umap-1.png b/vignettes/figures/batch-correction-umap-1.png
diff --git a/vignettes/figures/multi-sample-spatial-1.png b/vignettes/figures/multi-sample-spatial-1.png
diff --git a/vignettes/figures/multi-sample-umap-1.png b/vignettes/figures/multi-sample-umap-1.png
diff --git a/vignettes/figures/parameter-selection-spatial-1.png b/vignettes/figures/parameter-selection-spatial-1.png
diff --git a/vignettes/multi-sample.Rmd b/vignettes/multi-sample.Rmd
@@ -13,7 +13,7 @@ knitr::opts_chunk$set(
     collapse = TRUE,
     comment = "#>",
     fig.path = "figures/",
-    dpi = 54
+    dpi = 36
 )
 ```
 

diff --git a/vignettes/parameter-selection.Rmd b/vignettes/parameter-selection.Rmd
@@ -13,7 +13,7 @@ knitr::opts_chunk$set(
     collapse = TRUE,
     comment = "#>",
     fig.path = "figures/",
-    dpi = 54
+    dpi = 36
 )
 ```