This package contains sample data and test data for the wqbench suite
of tools.
# install.packages("remotes")
remotes::install_github("bcgov/wqbenchdata")library(wqbenchdata)Use the sample data set called aquatic_data which contains 100 rows.
str(aquatic_data)## Classes 'tbl_df', 'tbl' and 'data.frame': 100 obs. of 24 variables:
## $ chemical_name : chr "N-(Phosphonomethyl)glycine" "N-(Phosphonomethyl)glycine" "N-(Phosphonomethyl)glycine" "4-Nitrophenol" ...
## $ cas : chr "1071836" "1071836" "1071836" "100027" ...
## $ latin_name : chr "Desmodesmus subspicatus" "Lemna gibba" "Oncorhynchus mykiss" "Ictalurus punctatus" ...
## $ common_name : chr "Green Algae" "Inflated Duckweed" "Rainbow Trout" "Channel Catfish" ...
## $ endpoint : chr "LOEC" "IC25" "NOEL" "LC50" ...
## $ effect : chr "Population" "Morphology" "Biochemistry" "Mortality" ...
## $ effect_conc_mg.L : num 0.39 11.9 0.11 15 6.4 21 1 120 0.09 4.6 ...
## $ lifestage : chr "Exponential growth phase (log)" "Exponential growth phase (log)" "Juvenile" "Not reported" ...
## $ duration_hrs : num 72 240 168 72 24 ...
## $ duration_class : chr "chronic" "chronic" "acute" "acute" ...
## $ effect_conc_std_mg.L : num 0.078 2.38 0.022 1.5 0.64 2.1 0.1 120 0.009 4.6 ...
## $ acr : int 5 5 5 10 10 10 10 1 10 1 ...
## $ media_type : chr "FW" "FW" "FW" "FW" ...
## $ trophic_group : Factor w/ 5 levels "Algae","Amphibian",..: 1 5 3 3 3 4 3 4 4 5 ...
## $ ecological_group : Factor w/ 3 levels "Other","Planktonic Invertebrate",..: 1 1 3 1 1 1 3 1 1 1 ...
## $ species_present_in_bc: logi FALSE FALSE TRUE FALSE TRUE FALSE ...
## $ author : chr "Vendrell,E., D.G.B. Ferraz, C. Sabater, and J.M. Carrasco" "Sobrero,M.C., F. Rimoldi, and A.E. Ronco" "Xie,L., K. Thrippleton, M.A. Irwin, G.S. Siemering, A. Mekebri, D. Crane, K. Berry, and D. Schlenk" "Holcombe,G.W., G.L. Phipps, M.L. Knuth, and T. Felhaber" ...
## $ title : chr "Effect of Glyphosate on Growth of Four Freshwater Species of Phytoplankton: A Microplate Bioassay" "Effects of the Glyphosate Active Ingredient and a Formulation on Lemna gibba L. at Different Exposure Levels an"| __truncated__ "Evaluation of Estrogenic Activities of Aquatic Herbicides and Surfactants Using an Rainbow Trout Vitellogenin Assay" "The Acute Toxicity of Selected Substituted Phenols, Benzenes and Benzoic Acid Esters to Fathead Minnows Pimephales promelas" ...
## $ source : chr "Bull. Environ. Contam. Toxicol.82(5): 538-542" "Bull. Environ. Contam. Toxicol.79(5): 537-543" "Toxicol. Sci.87(2): 391-398" "Environ. Pollut. A.35(4): 367-381" ...
## $ publication_year : chr "2009" "2007" "2005" "1984" ...
## $ present_in_bc_wqg : logi TRUE TRUE TRUE FALSE TRUE FALSE ...
## $ species_number : int 17449 1799 4 20 1 652 23 4733 102 1799 ...
## $ download_date : chr "2023-04-06 14:03:39" "2023-04-06 14:03:39" "2023-04-06 14:03:39" "2023-04-06 14:03:39" ...
## $ version : chr "ecotox_ascii_03_15_2023" "ecotox_ascii_03_15_2023" "ecotox_ascii_03_15_2023" "ecotox_ascii_03_15_2023" ...
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The code is released under the Apache License 2.0
Copyright 2023 Province of British Columbia
Licensed under the Apache License, Version 2.0 (the “License”); you may not use this file except in compliance with the License. You may obtain a copy of the License at
https://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an “AS IS” BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.