Merge pull request #92 from pnnl/updated-master-1.2.5

Update version number to 1.2.5
pnnl · Aug 17, 2022 · 5e11968 · 5e11968
2 parents fa6bd85 + 5a6a511
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diff --git a/docs/build/.buildinfo b/docs/build/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 1592a9831592ff94fd7c3477463d4243
+config: 78ac025a6928d4bc4cd11311253c4872
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/docs/build/.doctrees/algorithms/algorithms.contagion.doctree b/docs/build/.doctrees/algorithms/algorithms.contagion.doctree
diff --git a/docs/build/.doctrees/algorithms/algorithms.doctree b/docs/build/.doctrees/algorithms/algorithms.doctree
diff --git a/docs/build/.doctrees/algorithms/modules.doctree b/docs/build/.doctrees/algorithms/modules.doctree
diff --git a/docs/build/.doctrees/classes/classes.doctree b/docs/build/.doctrees/classes/classes.doctree
diff --git a/docs/build/.doctrees/classes/modules.doctree b/docs/build/.doctrees/classes/modules.doctree
diff --git a/docs/build/.doctrees/core.doctree b/docs/build/.doctrees/core.doctree
diff --git a/docs/build/.doctrees/drawing/drawing.doctree b/docs/build/.doctrees/drawing/drawing.doctree
diff --git a/docs/build/.doctrees/drawing/modules.doctree b/docs/build/.doctrees/drawing/modules.doctree
diff --git a/docs/build/.doctrees/environment.pickle b/docs/build/.doctrees/environment.pickle
diff --git a/docs/build/.doctrees/glossary.doctree b/docs/build/.doctrees/glossary.doctree
diff --git a/docs/build/.doctrees/index.doctree b/docs/build/.doctrees/index.doctree
diff --git a/docs/build/.doctrees/install.doctree b/docs/build/.doctrees/install.doctree
diff --git a/docs/build/.doctrees/license.doctree b/docs/build/.doctrees/license.doctree
diff --git a/docs/build/.doctrees/modularity.doctree b/docs/build/.doctrees/modularity.doctree
diff --git a/docs/build/.doctrees/nwhy.doctree b/docs/build/.doctrees/nwhy.doctree
diff --git a/docs/build/.doctrees/overview/index.doctree b/docs/build/.doctrees/overview/index.doctree
diff --git a/docs/build/.doctrees/publications.doctree b/docs/build/.doctrees/publications.doctree
diff --git a/docs/build/.doctrees/reports/modules.doctree b/docs/build/.doctrees/reports/modules.doctree
diff --git a/docs/build/.doctrees/reports/reports.doctree b/docs/build/.doctrees/reports/reports.doctree
diff --git a/docs/build/.doctrees/widget.doctree b/docs/build/.doctrees/widget.doctree
diff --git a/docs/build/_modules/algorithms/contagion/animation.html b/docs/build/_modules/algorithms/contagion/animation.html
@@ -3,7 +3,7 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>algorithms.contagion.animation &mdash; HyperNetX 1.2.4 documentation</title>
+  <title>algorithms.contagion.animation &mdash; HyperNetX 1.2.5 documentation</title>
       <link rel="stylesheet" href="../../../_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="../../../_static/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
@@ -13,6 +13,7 @@
         <script data-url_root="../../../" id="documentation_options" src="../../../_static/documentation_options.js"></script>
         <script src="../../../_static/jquery.js"></script>
         <script src="../../../_static/underscore.js"></script>
+        <script src="../../../_static/_sphinx_javascript_frameworks_compat.js"></script>
         <script src="../../../_static/doctools.js"></script>
         <script src="../../../_static/copybutton.js"></script>
     <script src="../../../_static/js/theme.js"></script>

diff --git a/docs/build/_modules/algorithms/contagion/epidemics.html b/docs/build/_modules/algorithms/contagion/epidemics.html
@@ -3,7 +3,7 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>algorithms.contagion.epidemics &mdash; HyperNetX 1.2.4 documentation</title>
+  <title>algorithms.contagion.epidemics &mdash; HyperNetX 1.2.5 documentation</title>
       <link rel="stylesheet" href="../../../_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="../../../_static/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
@@ -13,6 +13,7 @@
         <script data-url_root="../../../" id="documentation_options" src="../../../_static/documentation_options.js"></script>
         <script src="../../../_static/jquery.js"></script>
         <script src="../../../_static/underscore.js"></script>
+        <script src="../../../_static/_sphinx_javascript_frameworks_compat.js"></script>
         <script src="../../../_static/doctools.js"></script>
         <script src="../../../_static/copybutton.js"></script>
     <script src="../../../_static/js/theme.js"></script>

diff --git a/docs/build/_modules/algorithms/generative_models.html b/docs/build/_modules/algorithms/generative_models.html
@@ -3,7 +3,7 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>algorithms.generative_models &mdash; HyperNetX 1.2.4 documentation</title>
+  <title>algorithms.generative_models &mdash; HyperNetX 1.2.5 documentation</title>
       <link rel="stylesheet" href="../../_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="../../_static/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
@@ -13,6 +13,7 @@
         <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
         <script src="../../_static/jquery.js"></script>
         <script src="../../_static/underscore.js"></script>
+        <script src="../../_static/_sphinx_javascript_frameworks_compat.js"></script>
         <script src="../../_static/doctools.js"></script>
         <script src="../../_static/copybutton.js"></script>
     <script src="../../_static/js/theme.js"></script>

diff --git a/docs/build/_modules/algorithms/homology_mod2.html b/docs/build/_modules/algorithms/homology_mod2.html
@@ -3,7 +3,7 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>algorithms.homology_mod2 &mdash; HyperNetX 1.2.4 documentation</title>
+  <title>algorithms.homology_mod2 &mdash; HyperNetX 1.2.5 documentation</title>
       <link rel="stylesheet" href="../../_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="../../_static/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
@@ -13,6 +13,7 @@
         <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
         <script src="../../_static/jquery.js"></script>
         <script src="../../_static/underscore.js"></script>
+        <script src="../../_static/_sphinx_javascript_frameworks_compat.js"></script>
         <script src="../../_static/doctools.js"></script>
         <script src="../../_static/copybutton.js"></script>
     <script src="../../_static/js/theme.js"></script>

diff --git a/docs/build/_modules/algorithms/hypergraph_modularity.html b/docs/build/_modules/algorithms/hypergraph_modularity.html
@@ -3,7 +3,7 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>algorithms.hypergraph_modularity &mdash; HyperNetX 1.2.4 documentation</title>
+  <title>algorithms.hypergraph_modularity &mdash; HyperNetX 1.2.5 documentation</title>
       <link rel="stylesheet" href="../../_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="../../_static/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
@@ -13,6 +13,7 @@
         <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
         <script src="../../_static/jquery.js"></script>
         <script src="../../_static/underscore.js"></script>
+        <script src="../../_static/_sphinx_javascript_frameworks_compat.js"></script>
         <script src="../../_static/doctools.js"></script>
         <script src="../../_static/copybutton.js"></script>
     <script src="../../_static/js/theme.js"></script>

diff --git a/docs/build/_modules/algorithms/laplacians_clustering.html b/docs/build/_modules/algorithms/laplacians_clustering.html
@@ -3,7 +3,7 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>algorithms.laplacians_clustering &mdash; HyperNetX 1.2.4 documentation</title>
+  <title>algorithms.laplacians_clustering &mdash; HyperNetX 1.2.5 documentation</title>
       <link rel="stylesheet" href="../../_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="../../_static/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
@@ -13,6 +13,7 @@
         <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
         <script src="../../_static/jquery.js"></script>
         <script src="../../_static/underscore.js"></script>
+        <script src="../../_static/_sphinx_javascript_frameworks_compat.js"></script>
         <script src="../../_static/doctools.js"></script>
         <script src="../../_static/copybutton.js"></script>
     <script src="../../_static/js/theme.js"></script>

diff --git a/docs/build/_modules/algorithms/s_centrality_measures.html b/docs/build/_modules/algorithms/s_centrality_measures.html
@@ -3,7 +3,7 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>algorithms.s_centrality_measures &mdash; HyperNetX 1.2.4 documentation</title>
+  <title>algorithms.s_centrality_measures &mdash; HyperNetX 1.2.5 documentation</title>
       <link rel="stylesheet" href="../../_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="../../_static/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
@@ -13,6 +13,7 @@
         <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
         <script src="../../_static/jquery.js"></script>
         <script src="../../_static/underscore.js"></script>
+        <script src="../../_static/_sphinx_javascript_frameworks_compat.js"></script>
         <script src="../../_static/doctools.js"></script>
         <script src="../../_static/copybutton.js"></script>
     <script src="../../_static/js/theme.js"></script>

diff --git a/docs/build/_modules/classes/entity.html b/docs/build/_modules/classes/entity.html
@@ -3,7 +3,7 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>classes.entity &mdash; HyperNetX 1.2.4 documentation</title>
+  <title>classes.entity &mdash; HyperNetX 1.2.5 documentation</title>
       <link rel="stylesheet" href="../../_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="../../_static/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
@@ -13,6 +13,7 @@
         <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
         <script src="../../_static/jquery.js"></script>
         <script src="../../_static/underscore.js"></script>
+        <script src="../../_static/_sphinx_javascript_frameworks_compat.js"></script>
         <script src="../../_static/doctools.js"></script>
         <script src="../../_static/copybutton.js"></script>
     <script src="../../_static/js/theme.js"></script>

diff --git a/docs/build/_modules/classes/hypergraph.html b/docs/build/_modules/classes/hypergraph.html
@@ -3,7 +3,7 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>classes.hypergraph &mdash; HyperNetX 1.2.4 documentation</title>
+  <title>classes.hypergraph &mdash; HyperNetX 1.2.5 documentation</title>
       <link rel="stylesheet" href="../../_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="../../_static/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
@@ -13,6 +13,7 @@
         <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
         <script src="../../_static/jquery.js"></script>
         <script src="../../_static/underscore.js"></script>
+        <script src="../../_static/_sphinx_javascript_frameworks_compat.js"></script>
         <script src="../../_static/doctools.js"></script>
         <script src="../../_static/copybutton.js"></script>
     <script src="../../_static/js/theme.js"></script>
@@ -2381,7 +2382,7 @@ <h1>Source code for classes.hypergraph</h1><div class="highlight"><pre>
 
 <div class="viewcode-block" id="Hypergraph.from_bipartite"><a class="viewcode-back" href="../../classes/classes.html#classes.hypergraph.Hypergraph.from_bipartite">[docs]</a>    <span class="nd">@classmethod</span>
     <span class="k">def</span> <span class="nf">from_bipartite</span><span class="p">(</span>
-        <span class="bp">cls</span><span class="p">,</span> <span class="n">B</span><span class="p">,</span> <span class="n">set_names</span><span class="o">=</span><span class="p">(</span><span class="s2">&quot;nodes&quot;</span><span class="p">,</span> <span class="s2">&quot;edges&quot;</span><span class="p">),</span> <span class="n">name</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">static</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">use_nwhy</span><span class="o">=</span><span class="kc">False</span>
+        <span class="bp">cls</span><span class="p">,</span> <span class="n">B</span><span class="p">,</span> <span class="n">set_names</span><span class="o">=</span><span class="p">(</span><span class="s2">&quot;edges&quot;</span><span class="p">,</span> <span class="s2">&quot;nodes&quot;</span><span class="p">),</span> <span class="n">name</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">static</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">use_nwhy</span><span class="o">=</span><span class="kc">False</span>
     <span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">        Static method creates a Hypergraph from a bipartite graph.</span>
@@ -2435,7 +2436,7 @@ <h1>Source code for classes.hypergraph</h1><div class="highlight"><pre>
         <span class="k">if</span> <span class="n">static</span><span class="p">:</span>
             <span class="n">elist</span> <span class="o">=</span> <span class="p">[]</span>
             <span class="k">for</span> <span class="n">e</span> <span class="ow">in</span> <span class="nb">list</span><span class="p">(</span><span class="n">B</span><span class="o">.</span><span class="n">edges</span><span class="p">):</span>
-                <span class="k">if</span> <span class="n">e</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="ow">in</span> <span class="n">nodes</span><span class="p">:</span>
+                <span class="k">if</span> <span class="n">e</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="ow">in</span> <span class="n">edges</span><span class="p">:</span>
                     <span class="n">elist</span><span class="o">.</span><span class="n">append</span><span class="p">([</span><span class="n">e</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">e</span><span class="p">[</span><span class="mi">1</span><span class="p">]])</span>
                 <span class="k">else</span><span class="p">:</span>
                     <span class="n">elist</span><span class="o">.</span><span class="n">append</span><span class="p">([</span><span class="n">e</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="n">e</span><span class="p">[</span><span class="mi">0</span><span class="p">]])</span>

diff --git a/docs/build/_modules/classes/staticentity.html b/docs/build/_modules/classes/staticentity.html
@@ -3,7 +3,7 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>classes.staticentity &mdash; HyperNetX 1.2.4 documentation</title>
+  <title>classes.staticentity &mdash; HyperNetX 1.2.5 documentation</title>
       <link rel="stylesheet" href="../../_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="../../_static/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
@@ -13,6 +13,7 @@
         <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
         <script src="../../_static/jquery.js"></script>
         <script src="../../_static/underscore.js"></script>
+        <script src="../../_static/_sphinx_javascript_frameworks_compat.js"></script>
         <script src="../../_static/doctools.js"></script>
         <script src="../../_static/copybutton.js"></script>
     <script src="../../_static/js/theme.js"></script>

diff --git a/docs/build/_modules/drawing/rubber_band.html b/docs/build/_modules/drawing/rubber_band.html
@@ -3,7 +3,7 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>drawing.rubber_band &mdash; HyperNetX 1.2.4 documentation</title>
+  <title>drawing.rubber_band &mdash; HyperNetX 1.2.5 documentation</title>
       <link rel="stylesheet" href="../../_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="../../_static/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
@@ -13,6 +13,7 @@
         <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
         <script src="../../_static/jquery.js"></script>
         <script src="../../_static/underscore.js"></script>
+        <script src="../../_static/_sphinx_javascript_frameworks_compat.js"></script>
         <script src="../../_static/doctools.js"></script>
         <script src="../../_static/copybutton.js"></script>
     <script src="../../_static/js/theme.js"></script>

diff --git a/docs/build/_modules/drawing/two_column.html b/docs/build/_modules/drawing/two_column.html
@@ -3,7 +3,7 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>drawing.two_column &mdash; HyperNetX 1.2.4 documentation</title>
+  <title>drawing.two_column &mdash; HyperNetX 1.2.5 documentation</title>
       <link rel="stylesheet" href="../../_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="../../_static/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
@@ -13,6 +13,7 @@
         <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
         <script src="../../_static/jquery.js"></script>
         <script src="../../_static/underscore.js"></script>
+        <script src="../../_static/_sphinx_javascript_frameworks_compat.js"></script>
         <script src="../../_static/doctools.js"></script>
         <script src="../../_static/copybutton.js"></script>
     <script src="../../_static/js/theme.js"></script>

diff --git a/docs/build/_modules/drawing/util.html b/docs/build/_modules/drawing/util.html
@@ -3,7 +3,7 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>drawing.util &mdash; HyperNetX 1.2.4 documentation</title>
+  <title>drawing.util &mdash; HyperNetX 1.2.5 documentation</title>
       <link rel="stylesheet" href="../../_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="../../_static/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
@@ -13,6 +13,7 @@
         <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
         <script src="../../_static/jquery.js"></script>
         <script src="../../_static/underscore.js"></script>
+        <script src="../../_static/_sphinx_javascript_frameworks_compat.js"></script>
         <script src="../../_static/doctools.js"></script>
         <script src="../../_static/copybutton.js"></script>
     <script src="../../_static/js/theme.js"></script>

diff --git a/docs/build/_modules/index.html b/docs/build/_modules/index.html
@@ -3,7 +3,7 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>Overview: module code &mdash; HyperNetX 1.2.4 documentation</title>
+  <title>Overview: module code &mdash; HyperNetX 1.2.5 documentation</title>
       <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="../_static/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
@@ -13,6 +13,7 @@
         <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js"></script>
         <script src="../_static/jquery.js"></script>
         <script src="../_static/underscore.js"></script>
+        <script src="../_static/_sphinx_javascript_frameworks_compat.js"></script>
         <script src="../_static/doctools.js"></script>
         <script src="../_static/copybutton.js"></script>
     <script src="../_static/js/theme.js"></script>

diff --git a/docs/build/_modules/reports/descriptive_stats.html b/docs/build/_modules/reports/descriptive_stats.html
@@ -3,7 +3,7 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>reports.descriptive_stats &mdash; HyperNetX 1.2.4 documentation</title>
+  <title>reports.descriptive_stats &mdash; HyperNetX 1.2.5 documentation</title>
       <link rel="stylesheet" href="../../_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="../../_static/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
@@ -13,6 +13,7 @@
         <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
         <script src="../../_static/jquery.js"></script>
         <script src="../../_static/underscore.js"></script>
+        <script src="../../_static/_sphinx_javascript_frameworks_compat.js"></script>
         <script src="../../_static/doctools.js"></script>
         <script src="../../_static/copybutton.js"></script>
     <script src="../../_static/js/theme.js"></script>