updated paper with orcid and doi ids

HNX_Paper/paper.bib

@@ -1,6 +1,7 @@
 
 @inproceedings{Joslyn2020DNS,
 	address = {Cham},
+  doi={10.1007/978-3-030-48478-1_1},
 	author = {Joslyn, Cliff A. and Aksoy, Sinan and Arendt, Dustin and Firoz, Jesun and Jenkins, Louis and Praggastis, Brenda and Purvine, Emilie and Zalewski, Marcin},
 	booktitle = {Algorithms and Models for the Web Graph},
 	editor = {Kami{\'{n}}ski, Bogumi{\l} and Pra{\l}at, Pawe{\l} and Szufel, Przemys{\l}aw},
@@ -12,6 +13,7 @@ @inproceedings{Joslyn2020DNS
 
 @article{Molnar2022Application,
   title={The application of directed hyper-graphs for analysis of models of information systems},
+  doi={10.3390/math10050759},
   author={Moln{\'a}r, B{\'a}lint and Bencz{\'u}r, Andr{\'a}s},
   journal={Mathematics},
   volume={10},
@@ -24,6 +26,7 @@ @article{Molnar2022Application
 /// Tony's work to quickly compute overlap sizes
 @inproceedings{Liu2021Parallel,
   title={Parallel algorithms for efficient computation of high-order line graphs of hypergraphs},
+  doi={10.1109/hipc53243.2021.00045},
   author={Liu, Xu T and Firoz, Jesun and Lumsdaine, Andrew and Joslyn, Cliff and Aksoy, Sinan and Praggastis, Brenda and Gebremedhin, Assefaw H},
   booktitle={2021 IEEE 28th International Conference on High Performance Computing, Data, and Analytics (HiPC)},
   pages={312--321},
@@ -33,6 +36,7 @@ @inproceedings{Liu2021Parallel
 
 @article{Zhou2022Topological,
   title={Topological simplifications of hypergraphs},
+  doi={10.1109/tvcg.2022.3153895},
   author={Zhou, Youjia and Rathore, Archit and Purvine, Emilie and Wang, Bei},
   journal={IEEE Transactions on Visualization and Computer Graphics},
   year={2022},
@@ -41,6 +45,7 @@ @article{Zhou2022Topological
 
 @article{Aksoy2020Hypernetwork,
   title={Hypernetwork science via high-order hypergraph walks},
+  doi={10.1140/epjds/s13688-020-00231-0},
   author={Aksoy, Sinan G and Joslyn, Cliff and Marrero, Carlos Ortiz and Praggastis, Brenda and Purvine, Emilie},
   journal={EPJ Data Science},
   volume={9},
@@ -52,6 +57,7 @@ @article{Aksoy2020Hypernetwork
 
 @article{Pickard2023HAT,
   title={HAT: Hypergraph analysis toolbox},
+  doi={10.1371/journal.pcbi.1011190},
   author={Pickard, Joshua and Chen, Can and Salman, Rahmy and Stansbury, Cooper and Kim, Sion and Surana, Amit and Bloch, Anthony and Rajapakse, Indika},
   journal={PLOS Computational Biology},
   volume={19},
@@ -63,13 +69,15 @@ @article{Pickard2023HAT
 
 @misc{Berge1973Graphs,
   title={Graphs and {H}ypergraphs,(translated by {E}dward {M}inieka)},
+  doi={10.1016/s0924-6509(09)x7013-3},
   author={Berge, Claude},
   year={1973},
   publisher={American Elsevier, New York}
 }
 
 @book{Berge1984Hypergraphs,
   title={Hypergraphs: combinatorics of finite sets},
+  doi={10.1016/s0924-6509(08)x7007-2},
   author={Berge, Claude},
   volume={45},
   year={1984},
@@ -78,6 +86,7 @@ @book{Berge1984Hypergraphs
 
 @article{Feng2021,
   title={Hypergraph models of biological networks to identify genes critical to pathogenic viral response},
+  doi={10.1186/s12859-021-04197-2},
   author={Feng, Song and Heath, Emily and Jefferson, Brett and Joslyn, Cliff and Kvinge, Henry and Mitchell, Hugh D and Praggastis, Brenda and Eisfeld, Amie J and Sims, Amy C and Thackray, Larissa B and others},
   journal={BMC bioinformatics},
   volume={22},
@@ -87,27 +96,18 @@ @article{Feng2021
   publisher={BioMed Central}
 }
 
-@article{Pickard2023Hat,
-  title={HAT: Hypergraph analysis toolbox},
-  author={Pickard, Joshua and Chen, Can and Salman, Rahmy and Stansbury, Cooper and Kim, Sion and Surana, Amit and Bloch, Anthony and Rajapakse, Indika},
-  journal={PLOS Computational Biology},
-  volume={19},
-  number={6},
-  pages={e1011190},
-  year={2023},
-  publisher={Public Library of Science San Francisco, CA USA}
-}
-
 // uses HNX vis capabilities
 @article{Vazquez2022Growth,
   title={Growth principles of natural hypergraphs},
+  doi={10.48550/arXiv.2208.03103},
   author={Vazquez, Alexei},
   journal={arXiv preprint arXiv:2208.03103},
   year={2022}
 }
 
 @article{Lotito2023Hypergraphx,
   title={Hypergraphx: a library for higher-order network analysis},
+  doi={10.1093/comnet/cnad019},
   author={Lotito, Quintino Francesco and Contisciani, Martina and De Bacco, Caterina and Di Gaetano, Leonardo and Gallo, Luca and Montresor, Alberto and Musciotto, Federico and Ruggeri, Nicol{\`o} and Battiston, Federico},
   journal={Journal of Complex Networks},
   volume={11},
@@ -119,13 +119,15 @@ @article{Lotito2023Hypergraphx
 
 @article{Praggastis2022SVD,
   title={The SVD of Convolutional Weights: A CNN Interpretability Framework},
+  doi={10.48550/arXiv.2208.06894},
   author={Praggastis, Brenda and Brown, Davis and Marrero, Carlos Ortiz and Purvine, Emilie and Shapiro, Madelyn and Wang, Bei},
   journal={arXiv preprint arXiv:2208.06894},
   year={2022}
 }
 
 @inproceedings{Joslyn2021,
 	address = {Cham},
+  doi={10.1007/978-3-030-67318-5_25},
 	author = {Joslyn, Cliff A. and Aksoy, Sinan G. and Callahan, Tiffany J. and Hunter, Lawrence E. and Jefferson, Brett and Praggastis, Brenda and Purvine, Emilie and Tripodi, Ignacio J.},
 	booktitle = {Unifying Themes in Complex Systems X},
 	editor = {Braha, Dan and de Aguiar, Marcus A. M. and Gershenson, Carlos and Morales, Alfredo J. and Kaufman, Les and Naumova, Elena N. and Minai, Ali A. and Bar-Yam, Yaneer},
@@ -204,6 +206,7 @@ @article{Landry2023
 
 @inproceedings{Szufel2019,
   title={SimpleHypergraphs. jl—novel software framework for modelling and analysis of hypergraphs},
+  doi={10.1007/978-3-030-25070-6_9},
   author={Antelmi, Alessia and Cordasco, Gennaro and Kami{\'n}ski, Bogumi{\l} and Pra{\l}at, Pawe{\l} and Scarano, Vittorio and Spagnuolo, Carmine and Szufel, Przemyslaw},
   booktitle={Algorithms and Models for the Web Graph: 16th International Workshop, WAW 2019, Brisbane, QLD, Australia, July 6--7, 2019, Proceedings 16},
   pages={115--129},

HNX_Paper/paper.md

@@ -14,25 +14,23 @@ authors:
   orcid: 0000-0003-1344-0497
   affiliation: "1"
 - name: Sinan Aksoy
-  orcid: 0000-0000-0000-0000
+  orcid: 0000-0002-3466-3334
   affiliation: "1"
 - name: Dustin Arendt
-  orcid: 0000-0000-0000-0000
+  orcid: 0000-0003-2466-199X
   affiliation: "1"
 - name: Mark Bonicillo
-  orcid: 0000-0000-0000-0000
   affiliation: "1" 
 - name: Cliff Joslyn
-  orcid: 0000-0000-0000-0000
+  orcid: 0000-0002-5923-5547
   affiliation: "1"
 - name: Emilie Purvine
-  orcid: 0000-0000-0000-0000
+  orcid: 0000-0003-2069-5594
   affiliation: "1" 
 - name: Madelyn Shapiro
-  orcid: 0000-0000-0000-0000
+  orcid: 0000-0002-2786-7056
   affiliation: "1" 
 - name: Ji Young Yun
-  orcid: 0000-0000-0000-0000
   affiliation: "1"
 affiliations:
 - name: Pacific Northwest National Laboratory, USA