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Liftoff fails when it is performed from only one reference #40

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GallVp opened this issue Jun 18, 2024 · 1 comment
Closed

Liftoff fails when it is performed from only one reference #40

GallVp opened this issue Jun 18, 2024 · 1 comment
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GallVp commented Jun 18, 2024

Reason:

groupTuple groups gff files by target assembly. Single gff is not ungrouped before feeding to the downstream map.

https://github.com/PlantandFoodResearch/pangene/blob/6713761c94c12b527c2cfa045f0bc455ac369f04/subworkflows/local/fasta_liftoff.nf#L83-L85
@GallVp GallVp added the bug Something isn't working label Jun 18, 2024
@GallVp GallVp added this to the 0.4.0 milestone Jun 18, 2024
@GallVp GallVp self-assigned this Jun 18, 2024
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GallVp commented Oct 6, 2024

Completed by https://github.com/PlantandFoodResearch/genepal/releases/tag/0.4.0

@GallVp GallVp closed this as completed Oct 6, 2024
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