fix allele-df-key for added indel fitlering

pinellolab · Mar 28, 2024 · 97d464e · 97d464e
1 parent 87a3523
commit 97d464e
Showing 1 changed file with 5 additions and 5 deletions.
diff --git a/tests/test_run.py b/tests/test_run.py
@@ -82,7 +82,7 @@ def test_run_variant_uniform_negctrl():
 
 @pytest.mark.order(22)
 def test_run_tiling_wo_negctrl():
-    cmd = "bean-run sorting tiling tests/data/tiling_mini_screen_annotated.h5ad --scale-by-acc --acc-bw-path tests/data/accessibility_signal.bw -o tests/test_res/tiling/ --allele-df-key allele_counts_spacer_0_19_A.G_translated_prop0.1_0.3 --control-guide-tag None  --repguide-mask None --n-iter 10"
+    cmd = "bean-run sorting tiling tests/data/tiling_mini_screen_annotated.h5ad --scale-by-acc --acc-bw-path tests/data/accessibility_signal.bw -o tests/test_res/tiling/ --control-guide-tag None  --repguide-mask None --n-iter 10"
     try:
         subprocess.check_output(
             cmd,
@@ -95,7 +95,7 @@ def test_run_tiling_wo_negctrl():
 
 @pytest.mark.order(23)
 def test_run_tiling_with_wo_negctrl_noacc():
-    cmd = "bean-run sorting tiling tests/data/tiling_mini_screen_annotated.h5ad -o tests/test_res/tiling/ --allele-df-key allele_counts_spacer_0_19_A.G_translated_prop0.1_0.3 --control-guide-tag None  --repguide-mask None --n-iter 10"
+    cmd = "bean-run sorting tiling tests/data/tiling_mini_screen_annotated.h5ad -o tests/test_res/tiling/ --control-guide-tag None  --repguide-mask None --n-iter 10"
     try:
         subprocess.check_output(
             cmd,
@@ -108,7 +108,7 @@ def test_run_tiling_with_wo_negctrl_noacc():
 
 @pytest.mark.order(23)
 def test_run_tiling_with_wo_negctrl_uniform():
-    cmd = "bean-run sorting tiling tests/data/tiling_mini_screen_annotated.h5ad -o tests/test_res/tiling/ --uniform-edit --allele-df-key allele_counts_spacer_0_19_A.G_translated_prop0.1_0.3 --control-guide-tag None --repguide-mask None --n-iter 10"
+    cmd = "bean-run sorting tiling tests/data/tiling_mini_screen_annotated.h5ad -o tests/test_res/tiling/ --uniform-edit --allele-df-key allele_counts_spacer_0_19_noindels_A.G_translated_prop0.1_0.3 --control-guide-tag None --repguide-mask None --n-iter 10"
     try:
         subprocess.check_output(
             cmd,
@@ -134,7 +134,7 @@ def test_run_tiling_negctrl_allelekey():
 
 @pytest.mark.order(25)
 def test_run_tiling_with_negctrl_noacc():
-    cmd = "bean-run sorting tiling tests/data/tiling_mini_screen_annotated.h5ad -o tests/test_res/tiling/ --allele-df-key allele_counts_spacer_0_19_A.G_translated_prop0.1_0.3 --fit-negctrl --negctrl-col strand --negctrl-col-value neg --control-guide-tag neg --repguide-mask None --n-iter 10"
+    cmd = "bean-run sorting tiling tests/data/tiling_mini_screen_annotated.h5ad -o tests/test_res/tiling/ --allele-df-key allele_counts_spacer_0_19_noindels_A.G_translated_prop0.1_0.3 --fit-negctrl --negctrl-col strand --negctrl-col-value neg --control-guide-tag neg --repguide-mask None --n-iter 10"
     try:
         subprocess.check_output(
             cmd,
@@ -147,7 +147,7 @@ def test_run_tiling_with_negctrl_noacc():
 
 @pytest.mark.order(26)
 def test_run_tiling_with_negctrl_uniform():
-    cmd = "bean-run sorting tiling tests/data/tiling_mini_screen_annotated.h5ad -o tests/test_res/tiling/ --uniform-edit --allele-df-key allele_counts_spacer_0_19_A.G_translated_prop0.1_0.3 --fit-negctrl --negctrl-col strand --negctrl-col-value neg --control-guide-tag neg --repguide-mask None --n-iter 10"
+    cmd = "bean-run sorting tiling tests/data/tiling_mini_screen_annotated.h5ad -o tests/test_res/tiling/ --uniform-edit --allele-df-key allele_counts_spacer_0_19_noindels_A.G_translated_prop0.1_0.3 --fit-negctrl --negctrl-col strand --negctrl-col-value neg --control-guide-tag neg --repguide-mask None --n-iter 10"
     try:
         subprocess.check_output(
             cmd,