enforce older matplotlib

pinellolab · May 22, 2024 · 56a0559 · 56a0559
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diff --git a/README.md b/README.md
@@ -51,7 +51,7 @@ See the [documentation](https://pinellolab.github.io/crispr-bean/) for tutorials
 | Coding sequence tiling libarary | Survival / Proliferation | Yes/No | [Coding sequence tiling screen](https://pinellolab.github.io/crispr-bean/tutorial_prolif_cds.html)
 | Perturbation library without reporter | FACS sorting | No | [No reporter screen](https://pinellolab.github.io/crispr-bean/tutorial_no_edit.html)
 
-Also see notebook that visualizes screen analysis result [here]().
+Also see notebook that visualizes screen analysis result [here](https://github.com/pinellolab/crispr-bean/blob/main/docs/visualize_var.ipynb).
 
 
 ### Library design: variant or tiling?

diff --git a/setup.py b/setup.py
@@ -29,7 +29,7 @@
         "pandas",
         "scipy",
         "perturb-tools>=0.3.3",
-        "matplotlib",
+        "matplotlib<=3.9",
         "seaborn>=0.13.0",
         "tqdm",
         "bio",