allow condition that's not in sample index

pinellolab · Apr 9, 2024 · 2e250b6 · 2e250b6
1 parent 6a1cd04
commit 2e250b6
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/bean/notebooks/sample_quality_report.ipynb b/bean/notebooks/sample_quality_report.ipynb
@@ -94,7 +94,8 @@
    "source": [
     "if not isinstance(replicate_label, str):\n",
     "    bdata.uns[\"sample_covariates\"] = replicate_label[1:]\n",
-    "bdata.samples[replicate_label] = bdata.samples[replicate_label].astype(str)"
+    "bdata.samples[\"replicate\"] = bdata.samples[replicate_label] = bdata.samples[replicate_label].astype(str)\n",
+    "bdata.samples[\"condition\"] = bdata.samples[condition_label]"
    ]
   },
   {