Skip to content

Commit

Permalink
update crispritz wrapper to report version
Browse files Browse the repository at this point in the history
  • Loading branch information
samuelecancellieri committed Jul 26, 2022
1 parent cb0aedb commit ef7e9ef
Showing 1 changed file with 4 additions and 2 deletions.
6 changes: 4 additions & 2 deletions crispritz.py
Original file line number Diff line number Diff line change
Expand Up @@ -17,6 +17,8 @@
# conda path
conda_path = "opt/crispritz/"

VERSION="2.6.6"

if '--debug' in sys.argv[1:]:
#for quick local tests
corrected_origin_path = origin_path+'/sourceCode/'
Expand Down Expand Up @@ -656,12 +658,12 @@ def removeFile(to_remove):


def version():
print("CRISPRitz v2.5.8")
print("CRISPRitz v",VERSION)


# HELP FUNCTION
def callHelp():

print("version",VERSION)
print("help:\n",
"\nALL FASTA FILEs USED BY THE SOFTWARE MUST BE UNZIPPED AND CHROMOSOME SEPARATED, ALL VCFs USED BY THE SOFTWARE MUST BE ZIPPED AND CHROMOSOME SEPARATED",
"\n",
Expand Down

0 comments on commit ef7e9ef

Please sign in to comment.