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Bump version to 2.3.1 and change default CRISPRessoPooled behavior to change in 2.3.2 #428

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Apr 26, 2024
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Bump version to 2.3.1 and change default CRISPRessoPooled behavior to change in 2.3.2 #428

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4 changes: 2 additions & 2 deletions CRISPResso2/CRISPRessoShared.py
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Original file line number Diff line number Diff line change
Expand Up @@ -28,7 +28,7 @@
from CRISPResso2 import CRISPResso2Align
from CRISPResso2 import CRISPRessoCOREResources

__version__ = "2.3.0"
__version__ = "2.3.1"


###EXCEPTIONS############################
Expand Down Expand Up @@ -1701,7 +1701,7 @@ def get_crispresso_header(description, header_str):
term_width) + "\n" + output_line

output_line += '\n' + ('[CRISPResso version ' + __version__ + ']').center(term_width) + '\n' + (
'[Note that as of version 2.3.0 FLASh and Trimmomatic have been replaced by fastp for read merging and trimming. Accordingly, the --flash_command and --trimmomatic_command parameters have been replaced with --fastp_command. Also, --trimmomatic_options_string has been replaced with --fastp_options_string.\n\nAlso in version 2.3.1, when running CRISPRessoPooled in mixed-mode (amplicon file and genome are provided) the default behavior will be as if the --demultiplex_only_at_amplicons parameter is provided. This change means that reads and amplicons do not need to align to the exact locations.]').center(
'[Note that as of version 2.3.0 FLASh and Trimmomatic have been replaced by fastp for read merging and trimming. Accordingly, the --flash_command and --trimmomatic_command parameters have been replaced with --fastp_command. Also, --trimmomatic_options_string has been replaced with --fastp_options_string.\n\nAlso in version 2.3.2, when running CRISPRessoPooled in mixed-mode (amplicon file and genome are provided) the default behavior will be as if the --demultiplex_only_at_amplicons parameter is provided. This change means that reads and amplicons do not need to align to the exact locations.]').center(
term_width) + "\n" + ('[For support contact [email protected] or [email protected]]').center(term_width) + "\n"

description_str = ""
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