Skip to content

Commit

Permalink
Update CRISPRessoShared.py
Browse files Browse the repository at this point in the history
  • Loading branch information
kclem committed Jan 22, 2019
1 parent 573aa90 commit 9d29737
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion CRISPResso2/CRISPRessoShared.py
Original file line number Diff line number Diff line change
Expand Up @@ -97,7 +97,7 @@ def getCRISPRessoArgParser(_ROOT, parserTitle = "CRISPResso Parameters",required
parser.add_argument('--split_paired_end',help='Splits a single fastq file containing paired end reads in two files before running CRISPResso',action='store_true')
parser.add_argument('--trim_sequences',help='Enable the trimming of Illumina adapters with Trimmomatic',action='store_true')
parser.add_argument('--trimmomatic_command', type=str, help='Command to run trimmomatic',default='trimmomatic')
parser.add_argument('--trimmomatic_options_string', type=str, help='Override options for Trimmomatic',default=''))
parser.add_argument('--trimmomatic_options_string', type=str, help='Override options for Trimmomatic',default='')
parser.add_argument('--min_paired_end_reads_overlap', type=int, help='Parameter for the FLASH read merging step. Minimum required overlap length between two reads to provide a confident overlap. ', default=None)
parser.add_argument('--max_paired_end_reads_overlap', type=int, help='Parameter for the FLASH merging step. Maximum overlap length expected in approximately 90%% of read pairs. Please see the FLASH manual for more information.', default=None)

Expand Down

0 comments on commit 9d29737

Please sign in to comment.