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pierrepo/README.md

Pierre Poulain, associate professor

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I am associate professor at Université Paris Cité, France. I currently perform my research at the Laboratory of Theoretical Biochemistry. I study the sharing and reuse of molecular dynamics simulation data and code. For this, I develop new methods and software, mostly in Python, using traditional machine learning technics or deep learning. More generally, I have a strong interest in data analysis and data management in biology and bioinformatics.

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Projects

Bayesian clustering

AutoClassWrapper AutoClassWeb

Jupyter-based platform for e-learning

Have a look to the Plasma project website.

Plasma AutoClassWeb

Structural bioinformatics

PBxplore Principal Axes

Misc

Bibliomarklets

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  1. PBxplore PBxplore Public

    A suite of tools to explore protein structures with Protein Blocks 🐍

    Python 28 17

  2. bibliomarklets bibliomarklets Public

    Des bookmarklets pour faciliter l'accès aux articles scientifiques payants via les proxys institutionnels 🔖

    HTML 7 3

  3. MalariaSmearSearch MalariaSmearSearch Public archive

    Blood smears database for malaria diagnosis 🔬

    Python 1

  4. autoclasswrapper autoclasswrapper Public

    AutoClassWrapper: a Python 🐍 wrapper for AutoClass C classification 📦 🚀

    Jupyter Notebook 3 3

  5. autoclassweb autoclassweb Public

    AutoClassWeb: a simple web interface for Bayesian clustering of omics data 📦 🚀

    Python 4