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Merge branch 'tools.setup.env.aotus' into 'master.dev'
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Installation script for AOTUS within the environment modules

See merge request piclas/piclas!775
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@pnizenkov
pnizenkov committed Feb 9, 2023
2 parents e275b6d + 363cc84 commit a6de162
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254 changes: 254 additions & 0 deletions tools/Setup_ModuleEnv/InstallAOTUS.sh
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#!/bin/bash -i

#==============================================================================
# title : InstallAOTUS.sh
# description : This script installs AOTUS with specific setting in a
# pre-installed module env
#
# "The Aotus library provides a Fortran wrapper around the C-API
# of the Lua scripting language, allowing a convenient usage of
# Lua scripts as configuration files in Fortran applications."
#
# date : Feb 9, 2023
# version : 1.0
# usage : bash InstallAOTUS.sh
# notes : Bash in run interactively via "-i" to use "module load/purge"
# commands
#==============================================================================

# Check privilege
if [[ "$EUID" -ne 0 ]]; then
echo "Please run as root"
exit 1
fi

# --------------------------------------------------------------------------------------------------
# Colors
# --------------------------------------------------------------------------------------------------

if test -t 1; then # if terminal
NbrOfColors=$(which tput > /dev/null && tput colors) # supports color
if test -n "$NbrOfColors" && test $NbrOfColors -ge 8; then
TERMCOLS=$(tput cols)
BOLD="$(tput bold)"
UNDERLINE="$(tput smul)"
STANDOUT="$(tput smso)"
NORMAL="$(tput sgr0)"
NC="$(tput sgr0)"
BLACK="$(tput setaf 0)"
RED="$(tput setaf 1)"
GREEN="$(tput setaf 2)"
YELLOW="$(tput setaf 3)"
BLUE="$(tput setaf 4)"
MAGENTA="$(tput setaf 5)"
CYAN="$(tput setaf 6)"
WHITE="$(tput setaf 7)"
fi
fi

# --------------------------------------------------------------------------------------------------
# Functions
# --------------------------------------------------------------------------------------------------

# --------------------------------------------------------------------------------------------------
# Setup
# --------------------------------------------------------------------------------------------------
# Check command line arguments
RERUNMODE=0
for ARG in "$@"
do

if [ ${ARG} == "--help" ] || [ ${ARG} == "-h" ]; then
echo "no help available. Exit."
echo "--help/-h print help information"
echo "--rerun/-r Re-run mode: Try to continue an already failed installation attempt."
exit
fi

# Check if re-run mode is selected by the user
if [[ ${ARG} == "--rerun" ]] || [[ ${ARG} =~ ^-r(erun)?$ ]]; then
RERUNMODE=1
fi

done

# DOWNLOAD and INSTALL AOTUS
# f1d4a8743773 2022-11-18 21:24:50 Added support for the Fujitsu FRPTX compiler for ARM64FX
AOTUSVERSION=f1d4a8
FULLAOTUSVERSION=f1d4a87437734eaa40cc4df3f8fcb72df7771cec
#WEBSITE="https://osdn.net/projects/apes/scm/hg/aotus/tree/${FULLAOTUSVERSION}/"
WEBSITE="https://osdn.net/projects/apes/scm/hg/aotus/archive/${FULLAOTUSVERSION}/?format=tar.gz"

# --------------------------------------------------------------------------------------------------
# Check pre-requisites
# --------------------------------------------------------------------------------------------------
if [[ ! -x "$(command -v lua)" ]]; then
read -p "LUA not found. Install LUA via 'sudo apt install lua5.4'? Press [Enter] to continue installation or [Crtl+c] to abort!"
sudo apt install lua5.4
else
LUAVERSION=$(lua -v | cut -d " " -f2)
echo "Detected lua version ${LUAVERSION}"
LUAMAJOR=$(echo ${LUAVERSION} | cut -d "." -f1)
LUAMINOR=$(echo ${LUAVERSION} | cut -d "." -f2)
LUAPATCH=$(echo ${LUAVERSION} | cut -d "." -f3)
if [[ ${LUAMAJOR} -lt 5 || ${LUAMINOR} -lt 4 ]]; then
echo "Please install a newer LUA version >= 5.4"
exit 1
fi
fi

if [[ ! -x "$(command -v brave-browser)" ]]; then
if [[ ! -x "$(command -v chromium)" ]]; then
if [[ ! -x "$(command -v firefox)" ]]; then
echo "Found neither brave-browser, nor chromium nor firefox. Exit."
exit 1
else
BROWSER='firefox'
fi
else
BROWSER='chromium'
fi
else
BROWSER='brave-browser'
fi

# --------------------------------------------------------------------------------------------------
# Settings
# --------------------------------------------------------------------------------------------------

INSTALLDIR=/opt
SOURCESDIR=/opt/sources
MODULESDIR=/opt/modules/modulefiles
TEMPLATEPATH=$(echo `pwd`/moduletemplates/utilities/aotus/aotus_temp)
if [[ ! -f ${TEMPLATEPATH} ]]; then
echo "${RED}ERROR: module template not found under ${TEMPLATEPATH}${NC}. Exit."
exit
fi
# e.g. aotus-f1d4a8.tar.gz
TARFILE=${SOURCESDIR}/aotus-${AOTUSVERSION}.tar.gz

if [ ! -d "${SOURCESDIR}" ]; then
mkdir -p "${SOURCESDIR}"
fi

AOTUSMODULEFILEDIR=${MODULESDIR}/utilities/aotus
MODULEFILE=${AOTUSMODULEFILEDIR}/${AOTUSVERSION}

# if no AOTUS module for this compiler found, install AOTUS and create module
if [ ! -e "${MODULEFILE}" ]; then
echo -e "$GREEN""creating AOTUS-${AOTUSVERSION} under ${MODULEFILE}$NC"
echo " "
#echo -e "$GREEN""Important: If the compilation step fails, run the script again and if it still fails \n1) try compiling single, .i.e., remove -j from make -j or \n2) try make -j 2 (not all available threads)$NC"
#echo " "
echo -e "This will install AOTUS version ${GREEN}${AOTUSVERSION}${NC}.\n"
if [[ ${RERUNMODE} -eq 0 ]]; then
read -p "Press [Enter] to continue or [Crtl+c] to abort!"
fi

# Install destination
AOTUSINSTALLDIR=/opt/aotus/${AOTUSVERSION}

# Change to sources directors
cd ${SOURCESDIR}

# Check if tar file was already extracted
CLONEDIR=${SOURCESDIR}/aotus-${AOTUSVERSION}
if [[ -d ${CLONEDIR} ]]; then
# Inquiry: Continue the installation with the existing files OR remove them all and start fresh
while true; do
echo " "
echo "${YELLOW}${CLONEDIR} already exists.${NC}"
echo "${YELLOW}Do you want to continue the installation (y/n)?${NC}"
# Inquiry
if [[ ${RERUNMODE} -eq 0 ]]; then
read -p "${YELLOW}Otherwise the directory will be removed and a fresh installation will be performed. [Y/n]${NC}" yn
else
yn=y
fi
# Select case
case $yn in
[Yy]* ) echo "Continuing... "; break;;
[Nn]* ) rm -rf ${CLONEDIR} ; break;;
* ) echo "Please answer yes or no.";;
esac
done
fi

# Download tar.gz file
if [ ! -f ${TARFILE} ]; then
echo ""
echo "${YELLOW}${TARFILE} not found under ${SOURCESDIR}${NC}"
echo "${YELLOW}Download the ${TARFILE} from ${WEBSITE} with ${BROWSER}.${NC}"
echo "${YELLOW}After downloading, the file must be moved (with sudo rights) to ${SOURCESDIR} by hand, e.g., sudo mv ~/Desktop/${TARFILE} /opt/sources/${NC}"
echo "${YELLOW}Afterwards, run this script again.${NC}"
echo ""
exit
fi

# Check if tar.gz file was correctly downloaded
if [ ! -f ${TARFILE} ]; then
echo -e "${RED}no source-file downloaded for aotus-${AOTUSVERSION}$NC"
echo -e "${RED}check ${WEBSITE} again and try to download the .tar.gz file$NC"
exit
fi

# Extract tar.gz file
if [[ ! -d ${CLONEDIR} ]]; then
echo "Extracting ${TARFILE} to ${SOURCESDIR} ..."
tar -xzf ${TARFILE}

# Check if extraction failed
ERRORCODE=$?
if [ ${ERRORCODE} -ne 0 ]; then
echo " "
echo -e "$RED""Failed: [tar -xzf ${TARFILE} aotus-${AOTUSVERSION}]$NC"
exit
fi
fi

# Check if decompressed directory exists
if [[ -d ${CLONEDIR} ]]; then
cd ${CLONEDIR}
else
echo -e "$RED""Failed: Cannot find extracted directory ${CLONEDIR}$NC"
exit
fi

# Configure
pwd
./waf configure --prefix="${AOTUSINSTALLDIR}" build

if [ ${PIPESTATUS[0]} -ne 0 ]; then
echo " "
echo -e "${RED}Failed command: [./waf configure build].\nIf you get the error "/usr/bin/env: ‘python’: No such file or directory", either create a symbolic link from python to python 3 via\n\n sudo ln -s /usr/bin/python3 /usr/bin/python\n\nor install the following package (Ubuntu)\n\n sudo apt-get install python-is-python3\n$NC"
exit
else
# Compile source files
./waf install
fi

# Check if compilation failed
if [ ${PIPESTATUS[0]} -ne 0 ]; then
echo " "
echo -e "$RED""Failed: [./waf install]$NC"
exit
fi

# create modulefile if the installation seems successful (check if mpicc, mpicxx, mpifort exists in installdir)
if [ -d "${AOTUSINSTALLDIR}/include" ]; then
if [ ! -d "${AOTUSMODULEFILEDIR}" ]; then
mkdir -p ${AOTUSMODULEFILEDIR}
fi
cp ${TEMPLATEPATH} ${MODULEFILE}
sed -i 's/aotusversion/'${AOTUSVERSION}'/gI' ${MODULEFILE}
sed -i 's/CMAKEVERSIONFLAG/'${CMAKEVERSION}'/gI' ${MODULEFILE}
sed -i 's/GCCVERSIONFLAG/'${GCCVERSION}'/gI' ${MODULEFILE}
sed -i 's/MPIVERSIONFLAG/'${OPENMPIVERSION}'/gI' ${MODULEFILE}
sed -i 's\AOTUSTOPDIR\'${AOTUSINSTALLDIR}'\gI' ${MODULEFILE}
else
echo -e "$RED""No module file created for AOTUS-${AOTUSVERSION}$NC"
echo -e "$RED""no installation found in ${AOTUSINSTALLDIR}/include$NC"
fi
else
echo -e "$YELLOW""AOTUS-${AOTUSVERSION} already created: module file exists under ${MODULEFILE}$NC"
fi
26 changes: 26 additions & 0 deletions tools/Setup_ModuleEnv/moduletemplates/utilities/aotus/aotus_temp
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#%Module1.0#####################################################################
##
## modules aotus/aotusversion
##
## modulefiles/utilities/aotus/aotusversion
##
proc ModulesHelp { } {
global version modroot

puts stderr "aotus-aotusversion - sets the Environment for AOTUS-aotusversion"
}

module-whatis "Sets the environment for using aotus-aotusversion"

conflict aotus

# for Tcl script use only
set topdir AOTUSTOPDIR
set version aotusversion
set sys linux64

prepend-path AOTUS_DIR $topdir
prepend-path AOTUS_ROOT $topdir
prepend-path PATH $topdir/include
prepend-path PATH $topdir/bin
prepend-path LD_LIBRARY_PATH $topdir/lib

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