Disable semantic similarity component

phenoscape · Aug 25, 2020 · e0b1a9d · e0b1a9d
1 parent 84efcf8
commit e0b1a9d
Showing 1 changed file with 4 additions and 12 deletions.
diff --git a/Makefile b/Makefile
@@ -35,8 +35,8 @@ clean:
 # 1. KB build
 # 2. Semantic similarity
 
-
-all: kb-build ss-scores-gen $(DB_FILE)
+# disabled semantic similarity component
+all: kb-build $(DB_FILE)
 
 # ########## # ##########
 # ########## # ##########
@@ -593,23 +593,15 @@ $(DB_FILE): $(BLAZEGRAPH_PROPERTIES) \
 			$(BUILD_DIR)/phenoscape-kb.ttl \
 			$(BUILD_DIR)/subclass-closure.ttl $(BUILD_DIR)/instance-closure.ttl \
 			$(BUILD_DIR)/bio-ontologies-property-graphs.ttl $(BUILD_DIR)/bio-ontologies-redundant-property-graphs.ttl \
-			$(BUILD_DIR)/corpus-ics-taxa.ttl $(BUILD_DIR)/taxa-expect-scores.ttl $(BUILD_DIR)/taxa-pairwise-sim.ttl \
-			$(BUILD_DIR)/corpus-ics-genes.ttl $(BUILD_DIR)/gene-expect-scores.ttl $(BUILD_DIR)/gene-pairwise-sim.ttl \
 			$(BUILD_DIR)/phylopics.owl \
-			$(BUILD_DIR)/vto_ncbi_common_names.owl \
-			$(BUILD_DIR)/build-time.ttl
+            $(BUILD_DIR)/vto_ncbi_common_names.owl \
+            $(BUILD_DIR)/build-time.ttl
 	rm -f $@ && \
  	$(BLAZEGRAPH-RUNNER) load --informat=turtle --journal=$@ --properties=$< --graph="http://kb.phenoscape.org/" $(BUILD_DIR)/phenoscape-kb.ttl && \
  	$(BLAZEGRAPH-RUNNER) load --informat=turtle --journal=$@ --properties=$< --graph="http://kb.phenoscape.org/closure" $(BUILD_DIR)/subclass-closure.ttl && \
  	$(BLAZEGRAPH-RUNNER) load --informat=turtle --journal=$@ --properties=$< --graph="http://kb.phenoscape.org/closure" $(BUILD_DIR)/instance-closure.ttl && \
  	$(BLAZEGRAPH-RUNNER) load --informat=turtle --journal=$@ --properties=$< --graph="http://kb.phenoscape.org/property_graphs/non-redundant" $(BUILD_DIR)/bio-ontologies-property-graphs.ttl && \
  	$(BLAZEGRAPH-RUNNER) load --informat=turtle --journal=$@ --properties=$< --graph="http://kb.phenoscape.org/property_graphs/redundant" $(BUILD_DIR)/bio-ontologies-redundant-property-graphs.ttl && \
- 	$(BLAZEGRAPH-RUNNER) load --informat=turtle --journal=$@ --properties=$< --graph="http://kb.phenoscape.org/sim/taxa" $(BUILD_DIR)/corpus-ics-taxa.ttl && \
- 	$(BLAZEGRAPH-RUNNER) load --informat=turtle --journal=$@ --properties=$< --graph="http://kb.phenoscape.org/sim/taxa" $(BUILD_DIR)/taxa-expect-scores.ttl && \
- 	$(BLAZEGRAPH-RUNNER) load --informat=turtle --journal=$@ --properties=$< --graph="http://kb.phenoscape.org/sim/taxa" $(BUILD_DIR)/taxa-pairwise-sim.ttl && \
- 	$(BLAZEGRAPH-RUNNER) load --informat=turtle --journal=$@ --properties=$< --graph="http://kb.phenoscape.org/sim/gene" $(BUILD_DIR)/corpus-ics-genes.ttl && \
- 	$(BLAZEGRAPH-RUNNER) load --informat=turtle --journal=$@ --properties=$< --graph="http://kb.phenoscape.org/sim/gene" $(BUILD_DIR)/gene-expect-scores.ttl && \
- 	$(BLAZEGRAPH-RUNNER) load --informat=turtle --journal=$@ --properties=$< --graph="http://kb.phenoscape.org/sim/gene" $(BUILD_DIR)/gene-pairwise-sim.ttl && \
 	$(BLAZEGRAPH-RUNNER) load --informat=rdfxml --journal=$@ --properties=$< --graph="http://purl.org/phenoscape/phylopics.owl" $(BUILD_DIR)/phylopics.owl && \
 	$(BLAZEGRAPH-RUNNER) load --informat=rdfxml --journal=$@ --properties=$< --graph="http://kb.phenoscape.org/" $(BUILD_DIR)/vto_ncbi_common_names.owl && \
  	$(BLAZEGRAPH-RUNNER) load --informat=turtle --journal=$@ --properties=$< --graph="http://kb.phenoscape.org/" $(BUILD_DIR)/build-time.ttl