Code

Tutorial + API upgrades#192

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Merged

Peter9192 merged 62 commits intomainphenology/springtime:mainfrom tutorialphenology/springtime:tutorialCopy head branch name to clipboardJan 23, 2024

+235,481-37,803

Commits

Commits on Sep 22, 2023

• Create example notebook

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Commits on Nov 20, 2023

• Intro + dummy data

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Commits on Nov 21, 2023

• Add todo's

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• Make a mess

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Commits on Nov 22, 2023

• Upgrade to pydantic V2

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Commits on Nov 23, 2023

• strip base class

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• Tutorial chapter on PEP725

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Commits on Nov 24, 2023

• Update data walkthrough

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Commits on Jan 2, 2024

• load dataset directly from yaml + small fixes + test ideas; WIP

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Commits on Jan 3, 2024

• Complete test suite for pep725

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• More shared fixtures + scaffold tests for eobs

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• Merge existing eobs functionality into a single class

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• Full refactor of eobs load method + update tutorial

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Commits on Jan 4, 2024

• Fix eobs tests + super simplify recipe structure + update notebook + implement resample in eobs

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Commits on Jan 5, 2024

• Fix filename handling for minimize_cache + add pytest option to regenerate test data

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• Update examples, bookkeep todo's

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• typo

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• Reorganize notebooks in docs

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• Move pep725 and eobs walkthroughs to their own notebooks and add a notebook for combining datasets

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• Add tutorial to docs and remove lots of noise

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• Start making ppo compatible with new structure

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• add ppo notebook to docs

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Commits on Jan 9, 2024

• working on ppo

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Commits on Jan 10, 2024

• one species at a time; finish notebook.

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• Add test suite for PPO

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• headers in docs

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• massive cleanup; make legacy folder for now, remove later

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• Refactor phenocamR

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Commits on Jan 11, 2024

• Start refactor daymet: combine all into single class

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• WIP - Make daymet loaders (partly) work again

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Commits on Jan 12, 2024

• Further work on daymet

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Commits on Jan 15, 2024

• Almost finish notebook on daymet

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• Add tests for daymet

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• add tests for phenocam

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Commits on Jan 16, 2024

• Improve phenocam tutorial notebook

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• Rework NPN notebook and code

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• also commit notebook updates

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• add tests for npn

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• mkdocs doesn't like embedded images in notebook

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• Further polish docs

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• Formatting...

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Commits on Jan 17, 2024

• Combine modis datasets into single class and start rewriting notebook

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• figure out units

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• Add link

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Commits on Jan 22, 2024

• WIP refactor MODIS

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• Add resample

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• Polish notebook

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Commits on Jan 23, 2024

• Add tests for appeears

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• Update docs intro page

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• remove legacy

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• Update CI

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• formatting

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  95f6136

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• fix types

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• remove unused import

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• fix internal links in docs

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• CI continue other tests if one fails

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• Don't install or call R or downloads in CI

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• fix imports in tests

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• split CI

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• fix issues

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• oopsie

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• better type ignores?

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