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sistr_cmd v1.1.3

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@kbessonov1984 kbessonov1984 released this 05 Dec 15:47
v1.1.3
177a6da
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Learn about vigilant mode.

Significant updates to the O24-25 antigen containing serovars reporting in line with the current practices. Users can now check the overall SISTR serovar prediction against the list of selected serovars that could be handy for reporting laboratories.

New features:

  • The O24 and 25 antigens will not be reported in the antigenic formula.
  • Soahanina, Martonos, Midway, Lindern, Bahrenfeld, Moussoro, Amberg, Madelia, Chichiri and Stafford serovars will not be reported and are replaced by other serovars listed in CHANGELOG.md Table 1
  • User can now use --list-of-serovars argument to provide a custom list of serovars to check against
  • Paratyphi B, Paratyphi B var. Java andI 1,4,[5],12:i:- will get information message in the qc_messages about the d-tartrate testing

For more details on new features and changes please check detailed CHANGELOG.md

New Contributors

What's Changed

  • move EmptyDataError to pandas.errors by @jameslz in #48
  • Updated location of SISTR database URL by @apetkau in #51

Full Changelog: v1.1.2...v1.1.3

Contributors

apetkau and jameslz
Assets 2
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