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Switched resource labels to process_single #67

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Apr 22, 2024
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Merged

Switched resource labels to process_single #67

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8 changes: 8 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -3,6 +3,14 @@
The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

## v0.1.1 - [2024-04-22]

### Added

### Changed

- Switched the resource labels for **parse_fastp**, **select_pointfinder**, **report**, and **parse_kat** from `process_low` to `process_single` as they are all configured to run on the local Nextflow machine.

## v0.1.0 - [2024-03-22]

Initial release of phac-nml/mikrokondo. Mikrokondo currently supports: read trimming and quality control, contamination detection, assembly (isolate, metagenomic or hybrid), annotation, AMR detection and subtyping of genomic sequencing data targeting bacterial or metagenomic data.
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2 changes: 1 addition & 1 deletion modules/local/parse_fastp.nf
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Expand Up @@ -3,7 +3,7 @@ import groovy.json.JsonSlurper

process PARSE_FASTP{
tag "$meta.id"
label "process_low"
label "process_single"

input:
tuple val(meta), val(json)
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2 changes: 1 addition & 1 deletion modules/local/parse_kat.nf
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Expand Up @@ -4,7 +4,7 @@ import groovy.json.JsonSlurper

process PARSE_KAT {
tag "$meta.id"
label "process_low"
label "process_single"
container "${workflow.containerEngine == 'singularity' || workflow.containerEngine == 'apptainer' ? task.ext.containers.get('singularity') : task.ext.containers.get('docker')}"

input:
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2 changes: 1 addition & 1 deletion modules/local/report.nf
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Expand Up @@ -11,7 +11,7 @@ import java.nio.file.Paths

process REPORT{
tag "Report Generation"

label "process_single"

input:
val test_in
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2 changes: 1 addition & 1 deletion modules/local/select_pointfinder.nf
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Expand Up @@ -2,7 +2,7 @@

process IDENTIFY_POINTDB {
tag "$meta.id"
label "process_low"
label "process_single"

input:
tuple val(meta), val(species)
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2 changes: 1 addition & 1 deletion nextflow.config
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Expand Up @@ -1026,7 +1026,7 @@ manifest {
description = """Mikrokondo beta"""
mainScript = 'main.nf'
nextflowVersion = '!>=23.04.0'
version = '0.1.0'
version = '0.1.1'
defaultBranch = 'main'
doi = ''
}
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